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Magnesium in PDB 9ixc: Crystal Structure of Manganese-Rebound N(Omega)-Hydroxy-L-Arginine Hydrolase with Oxidized CYS86

Enzymatic activity of Crystal Structure of Manganese-Rebound N(Omega)-Hydroxy-L-Arginine Hydrolase with Oxidized CYS86

All present enzymatic activity of Crystal Structure of Manganese-Rebound N(Omega)-Hydroxy-L-Arginine Hydrolase with Oxidized CYS86:
3.5.3.25;

Protein crystallography data

The structure of Crystal Structure of Manganese-Rebound N(Omega)-Hydroxy-L-Arginine Hydrolase with Oxidized CYS86, PDB code: 9ixc was solved by K.Oda, Y.Matoba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.22 / 1.26
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 45.94, 46.743, 58.338, 85.33, 86.91, 70.59
R / Rfree (%) 16.5 / 18.6

Other elements in 9ixc:

The structure of Crystal Structure of Manganese-Rebound N(Omega)-Hydroxy-L-Arginine Hydrolase with Oxidized CYS86 also contains other interesting chemical elements:

Manganese (Mn) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Manganese-Rebound N(Omega)-Hydroxy-L-Arginine Hydrolase with Oxidized CYS86 (pdb code 9ixc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Manganese-Rebound N(Omega)-Hydroxy-L-Arginine Hydrolase with Oxidized CYS86, PDB code: 9ixc:

Magnesium binding site 1 out of 1 in 9ixc

Go back to Magnesium Binding Sites List in 9ixc
Magnesium binding site 1 out of 1 in the Crystal Structure of Manganese-Rebound N(Omega)-Hydroxy-L-Arginine Hydrolase with Oxidized CYS86


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Manganese-Rebound N(Omega)-Hydroxy-L-Arginine Hydrolase with Oxidized CYS86 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg403

b:20.6
occ:0.54
O A:HOH768 2.0 33.0 1.0
O A:HOH509 2.1 27.6 1.0
OE1 A:GLU178 3.7 24.8 1.0
O A:HOH560 4.1 28.4 1.0
O A:HOH641 4.2 15.7 1.0
CD A:GLU178 4.4 19.2 1.0
O A:HOH564 4.6 26.0 1.0
CB A:GLU178 4.7 11.9 1.0
CG A:GLU178 4.7 14.5 1.0

Reference:

K.Oda, Y.Matoba. Copper Inactivates Dcsb By Oxidizing the Metal Ligand CYS86 to Sulfinic Acid. Febs J. 2024.
ISSN: ISSN 1742-464X
DOI: 10.1111/FEBS.17325
Page generated: Wed Nov 27 19:10:15 2024

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