Magnesium in PDB 9j2f: Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida
Other elements in 9j2f:
The structure of Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
39;
Binding sites:
The binding sites of Magnesium atom in the Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida
(pdb code 9j2f). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 39 binding sites of Magnesium where determined in the
Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida, PDB code: 9j2f:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 39 in 9j2f
Go back to
Magnesium Binding Sites List in 9j2f
Magnesium binding site 1 out
of 39 in the Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg405
b:6.1
occ:1.00
|
O
|
b:HOH205
|
2.1
|
14.6
|
1.0
|
|
O
|
9:HOH205
|
2.1
|
18.0
|
1.0
|
|
O
|
C:HOH525
|
2.1
|
15.4
|
1.0
|
|
OD1
|
C:ASN167
|
2.3
|
18.8
|
1.0
|
|
OD2
|
C:ASP166
|
2.3
|
17.4
|
1.0
|
|
OD1
|
C:ASP166
|
2.3
|
18.2
|
1.0
|
|
O
|
9:SER42
|
2.4
|
12.7
|
1.0
|
|
CG
|
C:ASP166
|
2.6
|
14.4
|
1.0
|
|
CG
|
C:ASN167
|
3.3
|
15.1
|
1.0
|
|
C
|
9:SER42
|
3.6
|
8.6
|
1.0
|
|
ND2
|
C:ASN167
|
3.8
|
12.0
|
1.0
|
|
CB
|
C:ASP166
|
4.2
|
15.1
|
1.0
|
|
OE1
|
b:GLU50
|
4.2
|
16.8
|
1.0
|
|
CA
|
9:THR43
|
4.2
|
10.1
|
1.0
|
|
N
|
C:ASN167
|
4.3
|
17.1
|
1.0
|
|
N
|
9:THR43
|
4.3
|
8.7
|
1.0
|
|
N
|
C:SER168
|
4.3
|
13.7
|
1.0
|
|
CB
|
9:SER42
|
4.5
|
9.2
|
1.0
|
|
OG
|
C:SER168
|
4.5
|
16.4
|
1.0
|
|
O
|
b:HOH210
|
4.6
|
22.0
|
1.0
|
|
CA
|
9:SER42
|
4.6
|
8.7
|
1.0
|
|
CB
|
C:SER168
|
4.6
|
13.9
|
1.0
|
|
CB
|
C:ASN167
|
4.6
|
15.1
|
1.0
|
|
O
|
b:HOH209
|
4.7
|
17.3
|
1.0
|
|
OG
|
9:SER42
|
4.7
|
11.8
|
1.0
|
|
CA
|
C:ASN167
|
4.9
|
14.9
|
1.0
|
|
NH1
|
b:ARG53
|
4.9
|
17.6
|
1.0
|
|
OD2
|
M:ASP81
|
4.9
|
21.7
|
1.0
|
|
CE1
|
C:PHE162
|
4.9
|
13.3
|
1.0
|
|
CA
|
C:ASP166
|
5.0
|
16.6
|
1.0
|
|
Magnesium binding site 2 out
of 39 in 9j2f
Go back to
Magnesium Binding Sites List in 9j2f
Magnesium binding site 2 out
of 39 in the Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg302
b:2.1
occ:1.00
|
MG
|
L:BCB302
|
0.0
|
2.1
|
1.0
|
|
NA
|
L:BCB302
|
2.0
|
1.6
|
1.0
|
|
ND
|
L:BCB302
|
2.0
|
1.6
|
1.0
|
|
NB
|
L:BCB302
|
2.1
|
1.8
|
1.0
|
|
NC
|
L:BCB302
|
2.1
|
1.6
|
1.0
|
|
NE2
|
L:HIS173
|
2.2
|
1.5
|
1.0
|
|
C4D
|
L:BCB302
|
2.9
|
2.2
|
1.0
|
|
C4A
|
L:BCB302
|
3.0
|
1.8
|
1.0
|
|
C1A
|
L:BCB302
|
3.0
|
2.2
|
1.0
|
|
C1B
|
L:BCB302
|
3.1
|
1.0
|
1.0
|
|
C4B
|
L:BCB302
|
3.1
|
0.8
|
1.0
|
|
CD2
|
L:HIS173
|
3.1
|
1.4
|
1.0
|
|
C1C
|
L:BCB302
|
3.1
|
1.1
|
1.0
|
|
C4C
|
L:BCB302
|
3.1
|
1.7
|
1.0
|
|
C1D
|
L:BCB302
|
3.2
|
1.8
|
1.0
|
|
CE1
|
L:HIS173
|
3.3
|
1.3
|
1.0
|
|
CHB
|
L:BCB302
|
3.4
|
1.4
|
1.0
|
|
CHA
|
L:BCB302
|
3.4
|
2.8
|
1.0
|
|
CHC
|
L:BCB302
|
3.5
|
1.3
|
1.0
|
|
CBB
|
M:BCB403
|
3.6
|
1.4
|
1.0
|
|
CHD
|
L:BCB302
|
3.6
|
1.6
|
1.0
|
|
CAB
|
M:BCB403
|
3.7
|
1.5
|
1.0
|
|
OBB
|
M:BCB403
|
3.8
|
2.4
|
1.0
|
|
C3D
|
L:BCB302
|
4.1
|
2.4
|
1.0
|
|
CG
|
L:HIS173
|
4.3
|
2.0
|
1.0
|
|
CD1
|
L:TRP167
|
4.3
|
1.8
|
1.0
|
|
C2A
|
L:BCB302
|
4.3
|
3.4
|
1.0
|
|
C3A
|
L:BCB302
|
4.3
|
2.6
|
1.0
|
|
ND1
|
L:HIS173
|
4.3
|
2.2
|
1.0
|
|
C3B
|
M:BCB403
|
4.3
|
1.1
|
1.0
|
|
C3B
|
L:BCB302
|
4.4
|
1.2
|
1.0
|
|
C3C
|
L:BCB302
|
4.4
|
1.5
|
1.0
|
|
C2B
|
L:BCB302
|
4.4
|
1.4
|
1.0
|
|
C2D
|
L:BCB302
|
4.4
|
2.1
|
1.0
|
|
NE1
|
L:TRP167
|
4.4
|
2.3
|
1.0
|
|
C2C
|
L:BCB302
|
4.5
|
1.8
|
1.0
|
|
CBD
|
L:BCB302
|
4.9
|
2.7
|
1.0
|
|
Magnesium binding site 3 out
of 39 in 9j2f
Go back to
Magnesium Binding Sites List in 9j2f
Magnesium binding site 3 out
of 39 in the Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg303
b:4.4
occ:1.00
|
MG
|
L:BCB303
|
0.0
|
4.4
|
1.0
|
|
NA
|
L:BCB303
|
2.0
|
5.9
|
1.0
|
|
ND
|
L:BCB303
|
2.1
|
3.8
|
1.0
|
|
NB
|
L:BCB303
|
2.1
|
4.5
|
1.0
|
|
NC
|
L:BCB303
|
2.1
|
3.9
|
1.0
|
|
NE2
|
L:HIS153
|
2.4
|
3.5
|
1.0
|
|
C4D
|
L:BCB303
|
2.9
|
3.8
|
1.0
|
|
C4A
|
L:BCB303
|
3.0
|
5.4
|
1.0
|
|
C1A
|
L:BCB303
|
3.0
|
4.6
|
1.0
|
|
C1B
|
L:BCB303
|
3.1
|
4.1
|
1.0
|
|
C4C
|
L:BCB303
|
3.1
|
3.2
|
1.0
|
|
C4B
|
L:BCB303
|
3.1
|
3.4
|
1.0
|
|
C1C
|
L:BCB303
|
3.1
|
3.9
|
1.0
|
|
C1D
|
L:BCB303
|
3.2
|
2.8
|
1.0
|
|
CD2
|
L:HIS153
|
3.3
|
3.4
|
1.0
|
|
CE1
|
L:HIS153
|
3.4
|
4.1
|
1.0
|
|
CHB
|
L:BCB303
|
3.4
|
4.2
|
1.0
|
|
CHA
|
L:BCB303
|
3.4
|
4.7
|
1.0
|
|
CHC
|
L:BCB303
|
3.5
|
3.4
|
1.0
|
|
CHD
|
L:BCB303
|
3.6
|
2.2
|
1.0
|
|
C3D
|
L:BCB303
|
4.2
|
3.1
|
1.0
|
|
OBB
|
L:BPB304
|
4.2
|
9.8
|
1.0
|
|
C3A
|
L:BCB303
|
4.3
|
6.8
|
1.0
|
|
C2A
|
L:BCB303
|
4.3
|
5.6
|
1.0
|
|
CE2
|
M:TYR209
|
4.4
|
4.5
|
1.0
|
|
C3C
|
L:BCB303
|
4.4
|
3.6
|
1.0
|
|
C2D
|
L:BCB303
|
4.4
|
3.2
|
1.0
|
|
C3B
|
L:BCB303
|
4.4
|
4.1
|
1.0
|
|
C2B
|
L:BCB303
|
4.4
|
4.3
|
1.0
|
|
ND1
|
L:HIS153
|
4.5
|
6.1
|
1.0
|
|
CG
|
L:HIS153
|
4.5
|
5.0
|
1.0
|
|
C2C
|
L:BCB303
|
4.5
|
4.4
|
1.0
|
|
CD2
|
L:LEU154
|
4.8
|
4.1
|
1.0
|
|
CBA
|
L:BCB303
|
4.8
|
8.4
|
1.0
|
|
CBD
|
L:BCB303
|
4.9
|
4.1
|
1.0
|
|
C19
|
L:BPB304
|
5.0
|
6.1
|
1.0
|
|
CMA
|
L:BCB303
|
5.0
|
6.9
|
1.0
|
|
CD2
|
M:TYR209
|
5.0
|
5.1
|
1.0
|
|
Magnesium binding site 4 out
of 39 in 9j2f
Go back to
Magnesium Binding Sites List in 9j2f
Magnesium binding site 4 out
of 39 in the Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg402
b:3.5
occ:1.00
|
MG
|
M:BCB402
|
0.0
|
3.5
|
1.0
|
|
NA
|
M:BCB402
|
2.0
|
4.0
|
1.0
|
|
ND
|
M:BCB402
|
2.1
|
2.5
|
1.0
|
|
NC
|
M:BCB402
|
2.1
|
3.3
|
1.0
|
|
NB
|
M:BCB402
|
2.1
|
3.8
|
1.0
|
|
NE2
|
M:HIS181
|
2.3
|
3.0
|
1.0
|
|
C4D
|
M:BCB402
|
3.0
|
2.6
|
1.0
|
|
C1A
|
M:BCB402
|
3.0
|
2.9
|
1.0
|
|
C4A
|
M:BCB402
|
3.0
|
3.2
|
1.0
|
|
C1B
|
M:BCB402
|
3.1
|
3.9
|
1.0
|
|
C4C
|
M:BCB402
|
3.1
|
2.4
|
1.0
|
|
C1C
|
M:BCB402
|
3.1
|
3.0
|
1.0
|
|
C4B
|
M:BCB402
|
3.1
|
3.6
|
1.0
|
|
C1D
|
M:BCB402
|
3.2
|
2.3
|
1.0
|
|
CD2
|
M:HIS181
|
3.2
|
3.4
|
1.0
|
|
CE1
|
M:HIS181
|
3.3
|
2.8
|
1.0
|
|
CHB
|
M:BCB402
|
3.4
|
3.6
|
1.0
|
|
CHA
|
M:BCB402
|
3.4
|
2.8
|
1.0
|
|
CHC
|
M:BCB402
|
3.5
|
3.0
|
1.0
|
|
CHD
|
M:BCB402
|
3.6
|
1.9
|
1.0
|
|
C3D
|
M:BCB402
|
4.2
|
2.0
|
1.0
|
|
C3A
|
M:BCB402
|
4.3
|
3.9
|
1.0
|
|
C2A
|
M:BCB402
|
4.3
|
3.5
|
1.0
|
|
C3C
|
M:BCB402
|
4.3
|
2.7
|
1.0
|
|
C3B
|
M:BCB402
|
4.4
|
4.9
|
1.0
|
|
OBB
|
M:BPB404
|
4.4
|
14.2
|
1.0
|
|
C2B
|
M:BCB402
|
4.4
|
4.5
|
1.0
|
|
C2D
|
M:BCB402
|
4.4
|
2.2
|
1.0
|
|
ND1
|
M:HIS181
|
4.4
|
3.2
|
1.0
|
|
CG
|
M:HIS181
|
4.4
|
3.8
|
1.0
|
|
C2C
|
M:BCB402
|
4.5
|
3.2
|
1.0
|
|
CE2
|
L:PHE181
|
4.7
|
3.9
|
1.0
|
|
CBA
|
M:BCB402
|
4.8
|
5.1
|
1.0
|
|
CBD
|
M:BCB402
|
4.9
|
3.1
|
1.0
|
|
CD2
|
M:LEU182
|
5.0
|
3.0
|
1.0
|
|
C16
|
M:NS5406
|
5.0
|
3.9
|
1.0
|
|
CMA
|
M:BCB402
|
5.0
|
2.5
|
1.0
|
|
Magnesium binding site 5 out
of 39 in 9j2f
Go back to
Magnesium Binding Sites List in 9j2f
Magnesium binding site 5 out
of 39 in the Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg403
b:3.3
occ:1.00
|
MG
|
M:BCB403
|
0.0
|
3.3
|
1.0
|
|
NA
|
M:BCB403
|
2.0
|
2.8
|
1.0
|
|
ND
|
M:BCB403
|
2.0
|
2.5
|
1.0
|
|
NB
|
M:BCB403
|
2.1
|
1.4
|
1.0
|
|
NC
|
M:BCB403
|
2.1
|
1.9
|
1.0
|
|
NE2
|
M:HIS201
|
2.3
|
2.7
|
1.0
|
|
C4D
|
M:BCB403
|
2.9
|
2.2
|
1.0
|
|
C1A
|
M:BCB403
|
3.0
|
2.0
|
1.0
|
|
C4A
|
M:BCB403
|
3.0
|
2.1
|
1.0
|
|
C1B
|
M:BCB403
|
3.1
|
1.4
|
1.0
|
|
C1C
|
M:BCB403
|
3.1
|
1.6
|
1.0
|
|
C4B
|
M:BCB403
|
3.1
|
1.4
|
1.0
|
|
C4C
|
M:BCB403
|
3.1
|
2.2
|
1.0
|
|
C1D
|
M:BCB403
|
3.2
|
2.4
|
1.0
|
|
CE1
|
M:HIS201
|
3.2
|
2.2
|
1.0
|
|
CBB
|
L:BCB302
|
3.3
|
1.3
|
1.0
|
|
CD2
|
M:HIS201
|
3.3
|
2.2
|
1.0
|
|
CHB
|
M:BCB403
|
3.4
|
1.7
|
1.0
|
|
CHA
|
M:BCB403
|
3.4
|
2.3
|
1.0
|
|
CHC
|
M:BCB403
|
3.5
|
1.3
|
1.0
|
|
CHD
|
M:BCB403
|
3.6
|
2.1
|
1.0
|
|
CAB
|
L:BCB302
|
3.8
|
1.5
|
1.0
|
|
C3D
|
M:BCB403
|
4.1
|
2.7
|
1.0
|
|
OBB
|
L:BCB302
|
4.3
|
3.3
|
1.0
|
|
C2A
|
M:BCB403
|
4.3
|
3.3
|
1.0
|
|
C3A
|
M:BCB403
|
4.3
|
3.3
|
1.0
|
|
ND1
|
M:HIS201
|
4.3
|
2.5
|
1.0
|
|
C3C
|
M:BCB403
|
4.3
|
2.0
|
1.0
|
|
C3B
|
M:BCB403
|
4.4
|
1.1
|
1.0
|
|
C2B
|
M:BCB403
|
4.4
|
1.3
|
1.0
|
|
C3B
|
L:BCB302
|
4.4
|
1.2
|
1.0
|
|
C2D
|
M:BCB403
|
4.4
|
2.5
|
1.0
|
|
CG
|
M:HIS201
|
4.4
|
2.5
|
1.0
|
|
C2C
|
M:BCB403
|
4.5
|
2.3
|
1.0
|
|
CD1
|
M:ILE205
|
4.7
|
2.0
|
1.0
|
|
CBD
|
M:BCB403
|
4.9
|
2.6
|
1.0
|
|
Magnesium binding site 6 out
of 39 in 9j2f
Go back to
Magnesium Binding Sites List in 9j2f
Magnesium binding site 6 out
of 39 in the Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg102
b:17.6
occ:1.00
|
MG
|
A:BCB102
|
0.0
|
17.6
|
1.0
|
|
NA
|
A:BCB102
|
2.0
|
17.5
|
1.0
|
|
ND
|
A:BCB102
|
2.1
|
14.7
|
1.0
|
|
NB
|
A:BCB102
|
2.1
|
13.8
|
1.0
|
|
NC
|
A:BCB102
|
2.1
|
14.7
|
1.0
|
|
NE2
|
A:HIS37
|
2.7
|
10.9
|
1.0
|
|
C4D
|
A:BCB102
|
3.0
|
14.2
|
1.0
|
|
C4A
|
A:BCB102
|
3.0
|
16.9
|
1.0
|
|
C1A
|
A:BCB102
|
3.0
|
16.1
|
1.0
|
|
C1B
|
A:BCB102
|
3.1
|
12.1
|
1.0
|
|
C1C
|
A:BCB102
|
3.1
|
11.3
|
1.0
|
|
C4B
|
A:BCB102
|
3.1
|
10.8
|
1.0
|
|
C4C
|
A:BCB102
|
3.1
|
13.4
|
1.0
|
|
C1D
|
A:BCB102
|
3.2
|
13.0
|
1.0
|
|
CHB
|
A:BCB102
|
3.4
|
15.8
|
1.0
|
|
CHA
|
A:BCB102
|
3.5
|
15.2
|
1.0
|
|
C76
|
r:CDL102
|
3.5
|
23.3
|
1.0
|
|
CHC
|
A:BCB102
|
3.5
|
9.3
|
1.0
|
|
CE1
|
A:HIS37
|
3.5
|
10.2
|
1.0
|
|
CHD
|
A:BCB102
|
3.6
|
12.3
|
1.0
|
|
CD2
|
A:HIS37
|
3.7
|
9.1
|
1.0
|
|
CMD
|
B:BCB202
|
4.2
|
8.9
|
1.0
|
|
C3D
|
A:BCB102
|
4.2
|
14.1
|
1.0
|
|
CBB
|
r:BCB101
|
4.2
|
15.9
|
1.0
|
|
CMB
|
r:BCB101
|
4.2
|
19.2
|
1.0
|
|
C74
|
r:CDL102
|
4.3
|
24.4
|
1.0
|
|
C3A
|
A:BCB102
|
4.3
|
19.5
|
1.0
|
|
C2A
|
A:BCB102
|
4.3
|
18.7
|
1.0
|
|
C3C
|
A:BCB102
|
4.4
|
11.7
|
1.0
|
|
C3B
|
A:BCB102
|
4.4
|
11.2
|
1.0
|
|
C2B
|
A:BCB102
|
4.4
|
13.2
|
1.0
|
|
C2D
|
A:BCB102
|
4.4
|
13.1
|
1.0
|
|
C75
|
r:CDL102
|
4.4
|
29.1
|
1.0
|
|
C2C
|
A:BCB102
|
4.5
|
13.2
|
1.0
|
|
ND1
|
A:HIS37
|
4.7
|
10.0
|
1.0
|
|
CG
|
A:HIS37
|
4.8
|
9.2
|
1.0
|
|
CBD
|
A:BCB102
|
4.9
|
15.7
|
1.0
|
|
CMA
|
A:BCB102
|
5.0
|
18.5
|
1.0
|
|
C2D
|
B:BCB202
|
5.0
|
11.0
|
1.0
|
|
Magnesium binding site 7 out
of 39 in 9j2f
Go back to
Magnesium Binding Sites List in 9j2f
Magnesium binding site 7 out
of 39 in the Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg202
b:13.7
occ:1.00
|
MG
|
B:BCB202
|
0.0
|
13.7
|
1.0
|
|
NA
|
B:BCB202
|
2.0
|
15.0
|
1.0
|
|
ND
|
B:BCB202
|
2.0
|
11.8
|
1.0
|
|
NB
|
B:BCB202
|
2.1
|
10.8
|
1.0
|
|
NC
|
B:BCB202
|
2.1
|
11.0
|
1.0
|
|
NE2
|
B:HIS37
|
2.4
|
12.9
|
1.0
|
|
C4D
|
B:BCB202
|
3.0
|
12.7
|
1.0
|
|
C4A
|
B:BCB202
|
3.0
|
15.8
|
1.0
|
|
C1A
|
B:BCB202
|
3.0
|
15.7
|
1.0
|
|
C1B
|
B:BCB202
|
3.1
|
12.2
|
1.0
|
|
C4B
|
B:BCB202
|
3.1
|
10.5
|
1.0
|
|
C4C
|
B:BCB202
|
3.1
|
9.3
|
1.0
|
|
C1C
|
B:BCB202
|
3.1
|
9.5
|
1.0
|
|
C1D
|
B:BCB202
|
3.1
|
9.6
|
1.0
|
|
CE1
|
B:HIS37
|
3.3
|
13.3
|
1.0
|
|
CD2
|
B:HIS37
|
3.3
|
11.9
|
1.0
|
|
CHB
|
B:BCB202
|
3.4
|
14.0
|
1.0
|
|
CHA
|
B:BCB202
|
3.5
|
15.0
|
1.0
|
|
CHC
|
B:BCB202
|
3.5
|
10.0
|
1.0
|
|
CHD
|
B:BCB202
|
3.6
|
8.9
|
1.0
|
|
CBB
|
D:BCB101
|
3.6
|
7.5
|
1.0
|
|
CMB
|
D:BCB101
|
3.9
|
8.3
|
1.0
|
|
C3D
|
B:BCB202
|
4.2
|
10.8
|
1.0
|
|
C3A
|
B:BCB202
|
4.3
|
21.6
|
1.0
|
|
C2B
|
B:BCB202
|
4.3
|
13.8
|
1.0
|
|
C2A
|
B:BCB202
|
4.3
|
16.7
|
1.0
|
|
C3B
|
B:BCB202
|
4.3
|
10.2
|
1.0
|
|
C2D
|
B:BCB202
|
4.4
|
11.0
|
1.0
|
|
C3C
|
B:BCB202
|
4.4
|
9.8
|
1.0
|
|
CAB
|
D:BCB101
|
4.4
|
8.2
|
1.0
|
|
ND1
|
B:HIS37
|
4.4
|
13.7
|
1.0
|
|
CG
|
B:HIS37
|
4.5
|
12.7
|
1.0
|
|
C2C
|
B:BCB202
|
4.5
|
9.2
|
1.0
|
|
C2B
|
D:BCB101
|
4.5
|
8.3
|
1.0
|
|
CMD
|
A:BCB102
|
4.6
|
13.8
|
1.0
|
|
C3B
|
D:BCB101
|
4.7
|
7.2
|
1.0
|
|
CD1
|
A:ILE36
|
4.8
|
10.4
|
1.0
|
|
CBD
|
B:BCB202
|
4.9
|
12.4
|
1.0
|
|
CG2
|
A:ILE36
|
4.9
|
9.2
|
1.0
|
|
Magnesium binding site 8 out
of 39 in 9j2f
Go back to
Magnesium Binding Sites List in 9j2f
Magnesium binding site 8 out
of 39 in the Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg101
b:11.8
occ:1.00
|
MG
|
D:BCB101
|
0.0
|
11.8
|
1.0
|
|
NA
|
D:BCB101
|
2.0
|
11.3
|
1.0
|
|
ND
|
D:BCB101
|
2.1
|
7.4
|
1.0
|
|
NB
|
D:BCB101
|
2.1
|
8.9
|
1.0
|
|
NC
|
D:BCB101
|
2.1
|
7.7
|
1.0
|
|
NE2
|
D:HIS37
|
2.7
|
6.6
|
1.0
|
|
C4D
|
D:BCB101
|
3.0
|
8.2
|
1.0
|
|
C4A
|
D:BCB101
|
3.0
|
9.3
|
1.0
|
|
C1A
|
D:BCB101
|
3.0
|
10.8
|
1.0
|
|
C1B
|
D:BCB101
|
3.1
|
9.2
|
1.0
|
|
C1C
|
D:BCB101
|
3.1
|
6.9
|
1.0
|
|
C4B
|
D:BCB101
|
3.1
|
7.0
|
1.0
|
|
C4C
|
D:BCB101
|
3.1
|
6.8
|
1.0
|
|
C1D
|
D:BCB101
|
3.2
|
6.2
|
1.0
|
|
CHB
|
D:BCB101
|
3.4
|
10.3
|
1.0
|
|
CHA
|
D:BCB101
|
3.5
|
8.8
|
1.0
|
|
CHC
|
D:BCB101
|
3.5
|
6.9
|
1.0
|
|
CD1
|
G:ILE23
|
3.5
|
18.4
|
1.0
|
|
CE1
|
D:HIS37
|
3.5
|
7.2
|
1.0
|
|
CHD
|
D:BCB101
|
3.6
|
6.8
|
1.0
|
|
CD2
|
D:HIS37
|
3.9
|
6.9
|
1.0
|
|
CMD
|
E:BCB101
|
4.0
|
5.5
|
1.0
|
|
CBB
|
B:BCB202
|
4.2
|
13.1
|
1.0
|
|
CMB
|
B:BCB202
|
4.2
|
13.7
|
1.0
|
|
C3D
|
D:BCB101
|
4.2
|
8.7
|
1.0
|
|
C3A
|
D:BCB101
|
4.3
|
11.7
|
1.0
|
|
C2A
|
D:BCB101
|
4.3
|
12.2
|
1.0
|
|
C3C
|
D:BCB101
|
4.4
|
7.9
|
1.0
|
|
C3B
|
D:BCB101
|
4.4
|
7.2
|
1.0
|
|
C2B
|
D:BCB101
|
4.4
|
8.3
|
1.0
|
|
C2D
|
D:BCB101
|
4.4
|
7.8
|
1.0
|
|
C2C
|
D:BCB101
|
4.5
|
8.2
|
1.0
|
|
CG2
|
G:ILE23
|
4.7
|
20.4
|
1.0
|
|
ND1
|
D:HIS37
|
4.7
|
7.6
|
1.0
|
|
C2D
|
E:BCB101
|
4.8
|
6.2
|
1.0
|
|
CG1
|
G:ILE23
|
4.9
|
25.3
|
1.0
|
|
C2B
|
B:BCB202
|
4.9
|
13.8
|
1.0
|
|
CG
|
D:HIS37
|
4.9
|
6.9
|
1.0
|
|
CBD
|
D:BCB101
|
4.9
|
10.7
|
1.0
|
|
CAB
|
B:BCB202
|
4.9
|
13.8
|
1.0
|
|
Magnesium binding site 9 out
of 39 in 9j2f
Go back to
Magnesium Binding Sites List in 9j2f
Magnesium binding site 9 out
of 39 in the Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg101
b:8.6
occ:1.00
|
MG
|
E:BCB101
|
0.0
|
8.6
|
1.0
|
|
NA
|
E:BCB101
|
2.0
|
12.5
|
1.0
|
|
ND
|
E:BCB101
|
2.0
|
8.9
|
1.0
|
|
NB
|
E:BCB101
|
2.1
|
8.8
|
1.0
|
|
NC
|
E:BCB101
|
2.1
|
7.9
|
1.0
|
|
NE2
|
E:HIS37
|
2.3
|
9.9
|
1.0
|
|
C4D
|
E:BCB101
|
3.0
|
7.1
|
1.0
|
|
C4A
|
E:BCB101
|
3.0
|
10.3
|
1.0
|
|
C1A
|
E:BCB101
|
3.0
|
9.7
|
1.0
|
|
C1B
|
E:BCB101
|
3.1
|
8.4
|
1.0
|
|
C4B
|
E:BCB101
|
3.1
|
7.0
|
1.0
|
|
C4C
|
E:BCB101
|
3.1
|
6.0
|
1.0
|
|
C1C
|
E:BCB101
|
3.1
|
6.5
|
1.0
|
|
C1D
|
E:BCB101
|
3.1
|
4.9
|
1.0
|
|
CE1
|
E:HIS37
|
3.2
|
9.6
|
1.0
|
|
CD2
|
E:HIS37
|
3.4
|
8.7
|
1.0
|
|
CHB
|
E:BCB101
|
3.4
|
9.9
|
1.0
|
|
CHA
|
E:BCB101
|
3.5
|
7.6
|
1.0
|
|
CHC
|
E:BCB101
|
3.5
|
5.9
|
1.0
|
|
CHD
|
E:BCB101
|
3.6
|
4.7
|
1.0
|
|
CBB
|
I:BCB101
|
3.6
|
5.6
|
1.0
|
|
CMB
|
I:BCB101
|
4.0
|
6.1
|
1.0
|
|
C3D
|
E:BCB101
|
4.1
|
6.4
|
1.0
|
|
C3A
|
E:BCB101
|
4.3
|
11.5
|
1.0
|
|
C2A
|
E:BCB101
|
4.3
|
10.6
|
1.0
|
|
C2D
|
E:BCB101
|
4.3
|
6.2
|
1.0
|
|
C2B
|
E:BCB101
|
4.4
|
7.7
|
1.0
|
|
C3B
|
E:BCB101
|
4.4
|
7.8
|
1.0
|
|
C3C
|
E:BCB101
|
4.4
|
6.7
|
1.0
|
|
ND1
|
E:HIS37
|
4.4
|
8.3
|
1.0
|
|
CMD
|
D:BCB101
|
4.4
|
7.9
|
1.0
|
|
CG
|
E:HIS37
|
4.5
|
7.8
|
1.0
|
|
CAB
|
I:BCB101
|
4.5
|
5.9
|
1.0
|
|
C2C
|
E:BCB101
|
4.5
|
6.0
|
1.0
|
|
C2B
|
I:BCB101
|
4.6
|
5.5
|
1.0
|
|
CD1
|
D:ILE36
|
4.7
|
6.8
|
1.0
|
|
C3B
|
I:BCB101
|
4.8
|
5.2
|
1.0
|
|
CG2
|
D:ILE36
|
4.9
|
5.1
|
1.0
|
|
CBD
|
E:BCB101
|
4.9
|
7.2
|
1.0
|
|
CMA
|
E:BCB101
|
5.0
|
11.7
|
1.0
|
|
Magnesium binding site 10 out
of 39 in 9j2f
Go back to
Magnesium Binding Sites List in 9j2f
Magnesium binding site 10 out
of 39 in the Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg101
b:9.6
occ:1.00
|
MG
|
I:BCB101
|
0.0
|
9.6
|
1.0
|
|
NA
|
I:BCB101
|
2.0
|
7.6
|
1.0
|
|
ND
|
I:BCB101
|
2.0
|
5.6
|
1.0
|
|
NB
|
I:BCB101
|
2.1
|
6.7
|
1.0
|
|
NC
|
I:BCB101
|
2.1
|
6.8
|
1.0
|
|
NE2
|
I:HIS37
|
2.8
|
4.9
|
1.0
|
|
C4D
|
I:BCB101
|
3.0
|
7.1
|
1.0
|
|
C4A
|
I:BCB101
|
3.0
|
7.7
|
1.0
|
|
C1A
|
I:BCB101
|
3.0
|
6.8
|
1.0
|
|
C1B
|
I:BCB101
|
3.1
|
6.6
|
1.0
|
|
C1C
|
I:BCB101
|
3.1
|
5.6
|
1.0
|
|
C4B
|
I:BCB101
|
3.1
|
5.0
|
1.0
|
|
C4C
|
I:BCB101
|
3.1
|
5.5
|
1.0
|
|
C1D
|
I:BCB101
|
3.2
|
5.4
|
1.0
|
|
CHB
|
I:BCB101
|
3.4
|
7.2
|
1.0
|
|
CHA
|
I:BCB101
|
3.5
|
7.0
|
1.0
|
|
CHC
|
I:BCB101
|
3.5
|
5.0
|
1.0
|
|
CD1
|
F:ILE23
|
3.6
|
9.9
|
1.0
|
|
CE1
|
I:HIS37
|
3.6
|
4.9
|
1.0
|
|
CHD
|
I:BCB101
|
3.6
|
5.9
|
1.0
|
|
CD2
|
I:HIS37
|
3.8
|
4.3
|
1.0
|
|
CMB
|
E:BCB101
|
4.0
|
8.7
|
1.0
|
|
CMD
|
J:BCB101
|
4.0
|
4.5
|
1.0
|
|
C3D
|
I:BCB101
|
4.2
|
6.4
|
1.0
|
|
CBB
|
E:BCB101
|
4.2
|
7.5
|
1.0
|
|
C2A
|
I:BCB101
|
4.3
|
8.8
|
1.0
|
|
C3A
|
I:BCB101
|
4.3
|
8.8
|
1.0
|
|
C3C
|
I:BCB101
|
4.4
|
5.7
|
1.0
|
|
C3B
|
I:BCB101
|
4.4
|
5.2
|
1.0
|
|
C2B
|
I:BCB101
|
4.4
|
5.5
|
1.0
|
|
C2D
|
I:BCB101
|
4.4
|
6.4
|
1.0
|
|
C2C
|
I:BCB101
|
4.5
|
5.6
|
1.0
|
|
C2B
|
E:BCB101
|
4.7
|
7.7
|
1.0
|
|
ND1
|
I:HIS37
|
4.8
|
5.8
|
1.0
|
|
CG2
|
F:ILE23
|
4.8
|
10.8
|
1.0
|
|
C2D
|
J:BCB101
|
4.8
|
5.8
|
1.0
|
|
CAB
|
E:BCB101
|
4.8
|
7.8
|
1.0
|
|
CG
|
I:HIS37
|
4.9
|
6.1
|
1.0
|
|
CBD
|
I:BCB101
|
4.9
|
7.8
|
1.0
|
|
CG1
|
F:ILE23
|
4.9
|
11.7
|
1.0
|
|
Reference:
Y.Kimura,
R.Kanno,
K.Mori,
Y.Matsuda,
R.Seto,
S.Takenaka,
H.Mino,
T.Ohkubo,
M.Honda,
Y.C.Sasaki,
J.Kishikawa,
K.Mitsuoka,
K.Mio,
M.Hall,
E.R.Purba,
T.Mochizuki,
A.Mizoguchi,
B.M.Humbel,
M.T.Madigan,
Z.-Y.Wang-Otomo,
K.Tani.
The Thermal-Stable LH1-Rc Complex of A Hot Spring Purple Bacterium Powers Photosynthesis with Extremely Low-Energy Near-Infrared Light. To Be Published.
Page generated: Sat Feb 8 22:47:17 2025
|
