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Magnesium in PDB 9mec: Crystal Structure of Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Amp/Alpha-D- Glucose-6-Phosphate Complex)

Enzymatic activity of Crystal Structure of Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Amp/Alpha-D- Glucose-6-Phosphate Complex)

All present enzymatic activity of Crystal Structure of Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Amp/Alpha-D- Glucose-6-Phosphate Complex):
2.7.1.90;

Protein crystallography data

The structure of Crystal Structure of Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Amp/Alpha-D- Glucose-6-Phosphate Complex), PDB code: 9mec was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.94 / 2.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 86.909, 86.909, 473.809, 90, 90, 90
R / Rfree (%) 20 / 23.7

Other elements in 9mec:

The structure of Crystal Structure of Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Amp/Alpha-D- Glucose-6-Phosphate Complex) also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Amp/Alpha-D- Glucose-6-Phosphate Complex) (pdb code 9mec). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Amp/Alpha-D- Glucose-6-Phosphate Complex), PDB code: 9mec:

Magnesium binding site 1 out of 1 in 9mec

Go back to Magnesium Binding Sites List in 9mec
Magnesium binding site 1 out of 1 in the Crystal Structure of Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Amp/Alpha-D- Glucose-6-Phosphate Complex)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Amp/Alpha-D- Glucose-6-Phosphate Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg509

b:98.5
occ:1.00
 O22 A:PPV503 2.4 116.3 1.0
OD1 A:ASP114 2.6 100.1 1.0
O31 A:PPV503 2.6 101.8 1.0
CG A:ASP114 3.4 97.9 1.0
OD2 A:ASP114 3.6 97.4 1.0
P2 A:PPV503 3.8 109.9 1.0
P1 A:PPV503 3.9 90.6 1.0
OD2 A:ASP144 4.0 70.6 1.0
OD2 A:ASP115 4.0 120.6 1.0
OPP A:PPV503 4.1 94.4 1.0
CG A:ASP115 4.3 122.7 1.0
O21 A:PPV503 4.5 89.2 1.0
N A:ASP114 4.6 93.4 1.0
OD1 A:ASP115 4.6 131.5 1.0
N A:ASP115 4.6 117.9 1.0
OD1 A:ASP144 4.7 68.5 1.0
O12 A:PPV503 4.8 101.6 1.0
O32 A:PPV503 4.8 99.6 1.0
CB A:ASP114 4.8 94.2 1.0
CG A:ASP144 4.8 70.9 1.0

Reference:

L.Liu, S.Lovell, K.P.Battaile. Crystal Structure of Pyrophosphate-Fructose 6-Phosphate 1-Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Amp/Alpha-D-Glucose-6-Phosphate Complex) To Be Published.
Page generated: Sat Feb 8 22:47:15 2025

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