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Magnesium in PDB 9med: Crystal Structure Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Amp/Beta-D- Glucose-6-Phosphate Complex)

Enzymatic activity of Crystal Structure Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Amp/Beta-D- Glucose-6-Phosphate Complex)

All present enzymatic activity of Crystal Structure Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Amp/Beta-D- Glucose-6-Phosphate Complex):
2.7.1.90;

Protein crystallography data

The structure of Crystal Structure Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Amp/Beta-D- Glucose-6-Phosphate Complex), PDB code: 9med was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.57 / 2.62
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 86.875, 86.875, 475.979, 90, 90, 90
R / Rfree (%) 19.2 / 23.4

Other elements in 9med:

The structure of Crystal Structure Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Amp/Beta-D- Glucose-6-Phosphate Complex) also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Amp/Beta-D- Glucose-6-Phosphate Complex) (pdb code 9med). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Amp/Beta-D- Glucose-6-Phosphate Complex), PDB code: 9med:

Magnesium binding site 1 out of 1 in 9med

Go back to Magnesium Binding Sites List in 9med
Magnesium binding site 1 out of 1 in the Crystal Structure Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Amp/Beta-D- Glucose-6-Phosphate Complex)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Amp/Beta-D- Glucose-6-Phosphate Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg505

b:108.5
occ:1.00
 O32 A:PPV503 2.8 124.4 1.0
OD1 A:ASP114 3.1 120.3 1.0
O31 A:PPV503 3.2 127.8 1.0
OD2 A:ASP144 3.5 91.0 1.0
OD2 A:ASP114 3.9 109.6 1.0
O11 A:PPV503 3.9 128.8 1.0
CG A:ASP114 3.9 117.1 1.0
OD2 A:ASP115 3.9 130.3 1.0
P1 A:PPV503 4.0 139.6 1.0
P2 A:PPV503 4.2 131.0 1.0
OPP A:PPV503 4.4 124.0 1.0
CB A:SER189 4.4 81.0 1.0
CG A:ASP115 4.5 118.7 1.0
OD2 A:ASP142 4.5 92.2 1.0
CG A:ASP144 4.6 86.5 1.0
OG A:SER189 4.7 90.8 1.0
OD1 A:ASP115 4.8 132.6 1.0
OD1 A:ASP144 4.9 83.1 1.0
O12 A:PPV503 5.0 111.1 1.0

Reference:

L.Liu, S.Lovell, K.P.Battaile. Crystal Structure Pyrophosphate-Fructose 6-Phosphate 1-Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Amp/Beta-D-Glucose-6-Phosphate Complex) To Be Published.
Page generated: Sat Feb 8 22:47:15 2025

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