Magnesium in PDB 9bzc: Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs

The structure of Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs, PDB code: 9bzc was solved by C.P.Jones, A.R.Ferre-D'amare, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.86 / 2.52
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	99.864, 47.673, 74.11, 90, 129.26, 90
R / Rfree (%)	19.5 / 22.6

The structure of Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs also contains other interesting chemical elements:

Caesium	(Cs)	2 atoms
Potassium	(K)	7 atoms

The binding sites of Magnesium atom in the Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs (pdb code 9bzc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs, PDB code: 9bzc:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg103 b:70.8 occ:1.00 OP1 A:U13 2.0 57.2 1.0 OP2 A:C30 2.0 54.5 1.0 O A:HOH205 2.1 54.1 1.0 O5 A:AMZ105 2.2 52.4 1.0 C6 A:AMZ105 3.2 53.8 1.0 P A:U13 3.3 65.4 1.0 N2 A:AMZ105 3.4 48.9 1.0 P A:C30 3.5 62.5 1.0 O5' A:U13 3.7 61.8 1.0 C5' A:C30 3.8 63.5 1.0 OP2 A:U13 4.0 57.0 1.0 O5' A:C30 4.1 60.4 1.0 O4' A:G14 4.2 57.3 1.0 O3' A:A29 4.3 57.9 1.0 OP1 A:C30 4.5 65.6 1.0 C5' A:U13 4.5 60.1 1.0 C3A A:AMZ105 4.5 57.1 1.0 O3' A:C12 4.5 68.2 1.0 N2 A:G86 4.6 56.0 1.0 N3 A:G86 4.6 57.5 1.0 C1' A:G14 4.6 55.0 1.0 O2' A:G86 4.9 73.6 1.0 N3 A:AMZ105 5.0 57.0 1.0

Magnesium binding site 2 out of 2 in the Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg104 b:87.9 occ:1.00 OP2 A:C58 2.1 101.8 1.0 OP1 A:U57 2.4 94.7 1.0 P A:C58 3.4 107.5 1.0 P A:U57 3.8 96.9 1.0 OP1 A:C58 3.9 95.1 1.0 OP2 A:A56 4.0 78.2 1.0 C5' A:A56 4.1 79.5 1.0 O5' A:U57 4.3 90.8 1.0 O3' A:U57 4.3 102.0 1.0 O4 A:U59 4.4 76.1 1.0 C5' A:U57 4.4 98.7 1.0 O5' A:C58 4.5 101.2 1.0 OP2 A:U57 4.8 88.3 1.0 O3' A:U55 4.8 79.8 1.0 O3' A:A56 4.8 87.2 1.0 C3' A:U57 4.8 102.3 1.0 P A:A56 4.9 80.8 1.0

C.P.Jones, B.Tran, A.R.Ferre-D'amare. Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs To Be Published.