Magnesium in PDB 9gmx: SLFN11 Wt Dimer Bound to Trna-Leu-Taa (Post-Cleavage State)

The structure of SLFN11 Wt Dimer Bound to Trna-Leu-Taa (Post-Cleavage State) also contains other interesting chemical elements:

Zinc	(Zn)	2 atoms
Manganese	(Mn)	2 atoms

The binding sites of Magnesium atom in the SLFN11 Wt Dimer Bound to Trna-Leu-Taa (Post-Cleavage State) (pdb code 9gmx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the SLFN11 Wt Dimer Bound to Trna-Leu-Taa (Post-Cleavage State), PDB code: 9gmx:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the SLFN11 Wt Dimer Bound to Trna-Leu-Taa (Post-Cleavage State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of SLFN11 Wt Dimer Bound to Trna-Leu-Taa (Post-Cleavage State) within 5.0Å range: probe atom residue distance (Å) B Occ T:Mg101 b:19.1 occ:1.00 OP1 T:C58 1.9 51.8 1.0 OP2 T:U60 2.5 36.0 1.0 P T:C58 3.2 51.7 1.0 O3' T:G57 3.7 48.1 1.0 P T:U60 3.7 41.1 1.0 O5' T:U60 4.0 40.2 1.0 OP2 T:C58 4.0 47.2 1.0 OP2 T:G61 4.0 32.8 1.0 OP1 T:U60 4.3 42.3 1.0 O5' T:C58 4.3 48.3 1.0 C5 T:U60 4.6 32.5 1.0 C5' T:C58 4.6 45.1 1.0 C6 T:U60 4.8 34.6 1.0 C3' T:G57 4.9 45.1 1.0 O3' T:G59 5.0 46.2 1.0

Magnesium binding site 2 out of 4 in the SLFN11 Wt Dimer Bound to Trna-Leu-Taa (Post-Cleavage State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of SLFN11 Wt Dimer Bound to Trna-Leu-Taa (Post-Cleavage State) within 5.0Å range: probe atom residue distance (Å) B Occ T:Mg102 b:25.3 occ:1.00 N7 T:G15 2.5 47.0 1.0 C8 T:G15 3.3 52.4 1.0 C5 T:G15 3.6 46.1 1.0 O6 T:G15 3.8 53.1 1.0 OP2 T:G15 4.0 56.2 1.0 C6 T:G15 4.1 47.8 1.0 O4 T:U8 4.1 50.7 1.0 OP2 T:A14 4.2 67.7 1.0 C4 T:U8 4.4 55.4 1.0 OP1 T:A7 4.5 64.1 1.0 N9 T:G15 4.6 56.4 1.0 N3 T:U8 4.6 55.7 1.0 C4 T:G15 4.7 50.6 1.0 C5 T:U8 5.0 50.2 1.0

Magnesium binding site 3 out of 4 in the SLFN11 Wt Dimer Bound to Trna-Leu-Taa (Post-Cleavage State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of SLFN11 Wt Dimer Bound to Trna-Leu-Taa (Post-Cleavage State) within 5.0Å range: probe atom residue distance (Å) B Occ T:Mg103 b:50.8 occ:1.00 N7 T:G13 2.7 66.5 1.0 OP2 T:C12 3.2 80.6 1.0 C8 T:G13 3.4 68.5 1.0 OP2 T:G13 3.9 74.3 1.0 C5 T:G13 3.9 65.1 1.0 OP2 T:U8 4.3 60.5 1.0 O6 T:G13 4.3 66.1 1.0 C5 T:U8 4.4 50.2 1.0 P T:C12 4.4 90.3 1.0 C6 T:G13 4.5 64.1 1.0 OP2 T:G9 4.6 55.1 1.0 O5' T:C12 4.6 84.6 1.0 N9 T:G13 4.7 69.8 1.0 C6 T:U8 4.8 47.8 1.0 C5 T:C12 4.9 77.5 1.0 C6 T:C12 4.9 79.9 1.0 C4 T:G13 5.0 67.2 1.0

Magnesium binding site 4 out of 4 in the SLFN11 Wt Dimer Bound to Trna-Leu-Taa (Post-Cleavage State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of SLFN11 Wt Dimer Bound to Trna-Leu-Taa (Post-Cleavage State) within 5.0Å range: probe atom residue distance (Å) B Occ T:Mg104 b:42.7 occ:1.00 OP2 T:A69 2.0 42.6 1.0 OP2 T:G57 3.5 51.0 1.0 P T:A69 3.5 42.6 1.0 C3' T:A68 4.0 37.9 1.0 O3' T:A68 4.1 41.2 1.0 OP1 T:A68 4.1 52.1 1.0 O5' T:A69 4.4 38.6 1.0 OP1 T:A69 4.4 47.0 1.0 N7 T:G57 4.5 46.5 1.0 C5' T:A69 4.6 37.7 1.0 P T:G57 4.8 54.6 1.0 OP2 T:C56 4.8 64.4 1.0 C8 T:G57 4.9 44.0 1.0 C2' T:A68 4.9 36.2 1.0

M.Kugler, F.J.Metzner, K.P.Hopfner, K.Lammens. Phosphorylation-Mediated Conformational Change Regulates Human SLFN11 Nat Commun 2024.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-024-54833-7