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Magnesium in PDB 9mj5: Catalytic Domain of Human Dna Polymerase Alpha in Complex with Dna and Rpa

Enzymatic activity of Catalytic Domain of Human Dna Polymerase Alpha in Complex with Dna and Rpa

All present enzymatic activity of Catalytic Domain of Human Dna Polymerase Alpha in Complex with Dna and Rpa:
2.7.7.7;

Other elements in 9mj5:

The structure of Catalytic Domain of Human Dna Polymerase Alpha in Complex with Dna and Rpa also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Catalytic Domain of Human Dna Polymerase Alpha in Complex with Dna and Rpa (pdb code 9mj5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Catalytic Domain of Human Dna Polymerase Alpha in Complex with Dna and Rpa, PDB code: 9mj5:

Magnesium binding site 1 out of 1 in 9mj5

Go back to Magnesium Binding Sites List in 9mj5
Magnesium binding site 1 out of 1 in the Catalytic Domain of Human Dna Polymerase Alpha in Complex with Dna and Rpa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Catalytic Domain of Human Dna Polymerase Alpha in Complex with Dna and Rpa within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Mg1301

b:64.6
occ:1.00
O2B S:DCP1302 1.9 65.0 1.0
O3G S:DCP1302 2.0 65.0 1.0
O1A S:DCP1302 2.0 65.0 1.0
O3A S:DCP1302 2.0 65.0 1.0
PB S:DCP1302 2.3 65.0 1.0
PA S:DCP1302 2.4 65.0 1.0
O3B S:DCP1302 2.7 65.0 1.0
PG S:DCP1302 2.9 65.0 1.0
OD2 S:ASP1004 3.3 68.1 1.0
O2A S:DCP1302 3.5 65.0 1.0
O5' S:DCP1302 3.7 65.0 1.0
O1B S:DCP1302 3.7 65.0 1.0
O S:PHE861 3.8 65.5 1.0
O2G S:DCP1302 3.8 65.0 1.0
OD1 S:ASP860 3.8 68.8 1.0
OD2 S:ASP860 4.0 68.8 1.0
O1G S:DCP1302 4.1 65.0 1.0
C5' S:DCP1302 4.1 65.0 1.0
CG S:ASP860 4.4 68.8 1.0
CG S:ASP1004 4.5 68.1 1.0
N S:SER863 4.8 63.4 1.0
C S:PHE861 4.9 65.5 1.0

Reference:

A.G.Baranovskiy, L.M.Morstadt, E.E.Romero, N.D.Babayeva, T.H.Tahirov. Human Primosome Requires Replication Protein A When Copying Dna with Inverted Repeats To Be Published.
Page generated: Tue Feb 25 11:23:02 2025

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