Atomistry » Magnesium » PDB 101d-1amu » 1agp
Atomistry »
  Magnesium »
    PDB 101d-1amu »
      1agp »

Magnesium in PDB 1agp: Three-Dimensional Structures and Properties of A Transforming and A Nontransforming Gly-12 Mutant of P21-H-Ras

Protein crystallography data

The structure of Three-Dimensional Structures and Properties of A Transforming and A Nontransforming Gly-12 Mutant of P21-H-Ras, PDB code: 1agp was solved by S.M.Franken, A.J.Scheidig, A.Wittinghofer, R.S.Goody, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.30
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 69.910, 39.810, 56.100, 90.00, 107.40, 90.00
R / Rfree (%) 17.7 / n/a

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Three-Dimensional Structures and Properties of A Transforming and A Nontransforming Gly-12 Mutant of P21-H-Ras (pdb code 1agp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Three-Dimensional Structures and Properties of A Transforming and A Nontransforming Gly-12 Mutant of P21-H-Ras, PDB code: 1agp:

Magnesium binding site 1 out of 1 in 1agp

Go back to Magnesium Binding Sites List in 1agp
Magnesium binding site 1 out of 1 in the Three-Dimensional Structures and Properties of A Transforming and A Nontransforming Gly-12 Mutant of P21-H-Ras


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Three-Dimensional Structures and Properties of A Transforming and A Nontransforming Gly-12 Mutant of P21-H-Ras within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg168

b:6.9
occ:1.00
O1G A:GNP167 2.4 5.6 1.0
O2B A:GNP167 2.4 4.0 1.0
OG1 A:THR35 2.6 10.8 1.0
OG A:SER17 2.6 3.3 1.0
HG A:SER17 2.6 0.0 1.0
O A:HOH172 2.7 4.6 1.0
CB A:THR35 3.1 12.6 1.0
H2 A:HOH172 3.2 0.0 1.0
O A:THR58 3.2 9.3 1.0
OD1 A:ASP57 3.4 10.2 1.0
HG1 A:THR35 3.4 0.0 1.0
OD2 A:ASP57 3.4 7.0 1.0
H A:SER17 3.5 0.0 1.0
H A:THR35 3.5 0.0 1.0
H1 A:HOH172 3.5 0.0 1.0
PG A:GNP167 3.5 7.6 1.0
PB A:GNP167 3.6 3.3 1.0
CG A:ASP57 3.7 7.5 1.0
HZ2 A:LYS16 3.8 0.0 1.0
CD A:LYS16 3.9 7.0 1.0
CB A:SER17 3.9 7.7 1.0
N A:SER17 3.9 10.3 1.0
N3B A:GNP167 4.0 5.5 1.0
CG2 A:THR35 4.1 12.0 1.0
HNB3 A:GNP167 4.1 0.0 1.0
N A:THR35 4.1 12.7 1.0
CB A:LYS16 4.1 4.7 1.0
O3G A:GNP167 4.2 9.8 1.0
CA A:THR35 4.3 12.0 1.0
O1B A:GNP167 4.3 4.5 1.0
CA A:SER17 4.3 9.0 1.0
CE A:LYS16 4.4 2.0 1.0
C A:THR58 4.4 6.9 1.0
NZ A:LYS16 4.5 2.6 1.0
CG A:LYS16 4.7 6.7 1.0
O2G A:GNP167 4.7 9.8 1.0
C A:LYS16 4.8 10.2 1.0
O3A A:GNP167 4.9 5.0 1.0
H A:GLY60 4.9 0.0 1.0
O2A A:GNP167 4.9 11.8 1.0
H A:LYS16 5.0 0.0 1.0
HZ1 A:LYS16 5.0 0.0 1.0
N A:THR58 5.0 5.0 1.0
H A:THR58 5.0 0.0 1.0
CA A:LYS16 5.0 8.2 1.0

Reference:

S.M.Franken, A.J.Scheidig, U.Krengel, H.Rensland, A.Lautwein, M.Geyer, K.Scheffzek, R.S.Goody, H.R.Kalbitzer, E.F.Pai, A.Wittinghofer. Three-Dimensional Structures and Properties of A Transforming and A Nontransforming Glycine-12 Mutant of P21H-Ras. Biochemistry V. 32 8411 1993.
ISSN: ISSN 0006-2960
PubMed: 8357792
DOI: 10.1021/BI00084A005
Page generated: Mon Dec 14 03:31:41 2020

Last articles

Zn in 7M6U
Zn in 7NNG
Zn in 7NEE
Zn in 7NEU
Zn in 7M3K
Zn in 7KWD
Zn in 7KYH
Zn in 7KNG
Zn in 7KY2
Zn in 7KYF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy