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Magnesium in PDB 1ajd: Three-Dimensional Structure of the D153G Mutant of E. Coli Alkaline Phosphatase: A Mutant with Weaker Magnesium Binding and Increased Catalytic Activity

Enzymatic activity of Three-Dimensional Structure of the D153G Mutant of E. Coli Alkaline Phosphatase: A Mutant with Weaker Magnesium Binding and Increased Catalytic Activity

All present enzymatic activity of Three-Dimensional Structure of the D153G Mutant of E. Coli Alkaline Phosphatase: A Mutant with Weaker Magnesium Binding and Increased Catalytic Activity:
3.1.3.1;

Protein crystallography data

The structure of Three-Dimensional Structure of the D153G Mutant of E. Coli Alkaline Phosphatase: A Mutant with Weaker Magnesium Binding and Increased Catalytic Activity, PDB code: 1ajd was solved by C.G.Dealwis, L.Chen, C.Abad-Zapatero, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 2.50
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 195.020, 166.930, 76.440, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / n/a

Other elements in 1ajd:

The structure of Three-Dimensional Structure of the D153G Mutant of E. Coli Alkaline Phosphatase: A Mutant with Weaker Magnesium Binding and Increased Catalytic Activity also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Three-Dimensional Structure of the D153G Mutant of E. Coli Alkaline Phosphatase: A Mutant with Weaker Magnesium Binding and Increased Catalytic Activity (pdb code 1ajd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Three-Dimensional Structure of the D153G Mutant of E. Coli Alkaline Phosphatase: A Mutant with Weaker Magnesium Binding and Increased Catalytic Activity, PDB code: 1ajd:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 1ajd

Go back to Magnesium Binding Sites List in 1ajd
Magnesium binding site 1 out of 2 in the Three-Dimensional Structure of the D153G Mutant of E. Coli Alkaline Phosphatase: A Mutant with Weaker Magnesium Binding and Increased Catalytic Activity


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Three-Dimensional Structure of the D153G Mutant of E. Coli Alkaline Phosphatase: A Mutant with Weaker Magnesium Binding and Increased Catalytic Activity within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg452

b:2.0
occ:1.00
OD2 A:ASP51 2.1 2.0 1.0
OE2 A:GLU322 2.2 2.0 1.0
O A:HOH456 2.2 2.0 1.0
OG1 A:THR155 2.6 2.0 1.0
O A:HOH455 2.8 2.0 1.0
CG A:ASP51 3.0 3.0 1.0
CD A:GLU322 3.3 2.0 1.0
CB A:THR155 3.3 2.0 1.0
CB A:ASP51 3.7 2.0 1.0
OE1 A:GLU322 3.7 2.0 1.0
OD1 A:ASP51 3.9 2.0 1.0
N A:THR155 4.0 2.0 1.0
CA A:THR155 4.3 2.0 1.0
CG2 A:THR155 4.4 2.0 1.0
CG A:GLU322 4.5 2.0 1.0
OG A:SER102 4.5 12.6 1.0
ZN A:ZN451 4.6 3.6 1.0
CB A:SER102 4.6 6.7 1.0
OD2 A:ASP369 4.8 2.6 1.0
CB A:ALA324 4.8 2.0 1.0
O A:ALA324 4.8 2.0 1.0
CD A:PRO156 4.9 2.0 1.0
CA A:ALA324 4.9 3.0 1.0

Magnesium binding site 2 out of 2 in 1ajd

Go back to Magnesium Binding Sites List in 1ajd
Magnesium binding site 2 out of 2 in the Three-Dimensional Structure of the D153G Mutant of E. Coli Alkaline Phosphatase: A Mutant with Weaker Magnesium Binding and Increased Catalytic Activity


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Three-Dimensional Structure of the D153G Mutant of E. Coli Alkaline Phosphatase: A Mutant with Weaker Magnesium Binding and Increased Catalytic Activity within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg952

b:2.0
occ:1.00
O B:HOH955 1.9 5.6 1.0
OD2 B:ASP51 2.0 2.8 1.0
OE2 B:GLU322 2.1 5.7 1.0
O B:HOH956 2.3 8.8 1.0
OG1 B:THR155 2.5 2.0 1.0
CG B:ASP51 3.0 6.6 1.0
CB B:THR155 3.0 4.8 1.0
CD B:GLU322 3.2 8.1 1.0
CB B:ASP51 3.5 2.0 1.0
OE1 B:GLU322 3.5 4.1 1.0
N B:THR155 3.9 5.5 1.0
OD1 B:ASP51 4.0 5.3 1.0
CA B:THR155 4.1 3.5 1.0
CG2 B:THR155 4.1 2.0 1.0
CG B:GLU322 4.5 5.0 1.0
OD2 B:ASP369 4.6 5.9 1.0
CA B:ALA324 4.7 4.1 1.0
CD B:PRO156 4.7 4.2 1.0
OG B:SER102 4.7 13.3 1.0
CB B:SER102 4.8 12.1 1.0
O B:ALA324 4.8 3.9 1.0
CA B:ASP51 4.8 4.8 1.0
CB B:ALA324 4.8 4.2 1.0
ZN B:ZN951 4.9 9.4 1.0

Reference:

C.G.Dealwis, C.Brennan, K.Christianson, W.Mandecki, C.Abad-Zapatero. Crystallographic Analysis of Reversible Metal Binding Observed in A Mutant (ASP153-->Gly) of Escherichia Coli Alkaline Phosphatase. Biochemistry V. 34 13967 1995.
ISSN: ISSN 0006-2960
PubMed: 7577993
DOI: 10.1021/BI00043A001
Page generated: Mon Dec 14 03:33:30 2020

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