Magnesium in PDB 1bdn: Crystal Lattice Packing Is Important in Determining the Bend of A Dna Dodecamer Containing An Adenine Tract

The structure of Crystal Lattice Packing Is Important in Determining the Bend of A Dna Dodecamer Containing An Adenine Tract, PDB code: 1bdn was solved by A.D.Digabriele, M.R.Sanderson, T.A.Steitz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 2.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	24.540, 40.320, 65.860, 90.00, 90.00, 90.00
R / Rfree (%)	20.1 / n/a

The binding sites of Magnesium atom in the Crystal Lattice Packing Is Important in Determining the Bend of A Dna Dodecamer Containing An Adenine Tract (pdb code 1bdn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Lattice Packing Is Important in Determining the Bend of A Dna Dodecamer Containing An Adenine Tract, PDB code: 1bdn:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Lattice Packing Is Important in Determining the Bend of A Dna Dodecamer Containing An Adenine Tract


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Lattice Packing Is Important in Determining the Bend of A Dna Dodecamer Containing An Adenine Tract within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg50 b:55.4 occ:1.00 OP2 A:DA7 2.7 2.0 0.6 C6 D:DT43 3.5 2.0 0.4 O5' A:DA7 3.7 2.0 0.6 C7 D:DT43 3.8 2.0 0.4 C8 A:DA7 3.8 8.9 0.6 OP2 D:DT43 3.8 2.8 0.4 P A:DA7 3.9 2.0 0.6 C2' D:DT42 4.0 2.0 0.4 C5 D:DT43 4.1 2.0 0.4 C2' A:DA7 4.3 7.8 0.6 O5' D:DT43 4.3 2.8 0.4 C2' D:DT43 4.3 2.0 0.4 C2' A:DA6 4.3 6.2 0.6 O4' D:DT43 4.4 2.0 0.4 N1 D:DT43 4.5 2.0 0.4 N7 A:DA7 4.5 8.9 0.6 C1' D:DT43 4.6 2.0 0.4 C7 D:DT44 4.7 31.9 0.4 N9 A:DA7 4.7 8.9 0.6 C3' D:DT42 4.7 2.0 0.4 C3' D:DT43 4.8 2.0 0.4 P D:DT43 4.8 2.8 0.4 OP1 A:DA7 4.9 2.0 0.6 O3' A:DA6 4.9 6.2 0.6 C3' A:DA6 5.0 6.2 0.6

Magnesium binding site 2 out of 2 in the Crystal Lattice Packing Is Important in Determining the Bend of A Dna Dodecamer Containing An Adenine Tract


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Lattice Packing Is Important in Determining the Bend of A Dna Dodecamer Containing An Adenine Tract within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg49 b:21.2 occ:1.00 OP2 A:DA7 4.3 2.0 0.6 OP1 D:DT42 4.5 2.1 0.4 O5' A:DA6 4.6 28.1 0.6 C5' D:DT42 4.6 2.0 0.4 C3' A:DA6 4.6 6.2 0.6 OP2 D:DT43 4.7 2.8 0.4 C3' D:DT42 4.8 2.0 0.4 P A:DA7 4.8 2.0 0.6 OP1 A:DA7 4.9 2.0 0.6 P D:DT42 4.9 2.1 0.4 O5' D:DT42 4.9 2.1 0.4

A.D.Digabriele, M.R.Sanderson, T.A.Steitz. Crystal Lattice Packing Is Important in Determining the Bend of A Dna Dodecamer Containing An Adenine Tract. Proc.Natl.Acad.Sci.Usa V. 86 1816 1989.
ISSN: ISSN 0027-8424
PubMed: 2928304
DOI: 10.1073/PNAS.86.6.1816