Magnesium in PDB 1bp8: 4:2:1 Mithramycin:Mg++:D(Acccgggt)2 Complex

The binding sites of Magnesium atom in the 4:2:1 Mithramycin:Mg++:D(Acccgggt)2 Complex (pdb code 1bp8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the 4:2:1 Mithramycin:Mg++:D(Acccgggt)2 Complex, PDB code: 1bp8:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the 4:2:1 Mithramycin:Mg++:D(Acccgggt)2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 4:2:1 Mithramycin:Mg++:D(Acccgggt)2 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg17 b:0.0 occ:1.00 O9 A:DXB21 1.7 0.0 1.0 O1 B:DXB19 2.1 0.0 1.0 O1 A:DXB21 2.1 0.0 1.0 O9 B:DXB19 2.3 0.0 1.0 C9 A:DXB21 2.8 0.0 1.0 HO8 A:DXB21 2.9 0.0 1.0 C1 A:DXB21 3.1 0.0 1.0 C1 B:DXB19 3.2 0.0 1.0 C9 B:DXB19 3.3 0.0 1.0 C9A A:DXB21 3.4 0.0 1.0 HO8 B:DXB19 3.5 0.0 1.0 H1 B:DDA11 3.5 0.0 1.0 O8 A:DXB21 3.6 0.0 1.0 O2 A:DC3 3.7 0.0 1.0 C9A B:DXB19 3.7 0.0 1.0 H1 A:DDA11 3.8 0.0 1.0 H1' A:DC3 3.8 0.0 1.0 C8A A:DXB21 3.9 0.0 1.0 H21 B:DG6 4.0 0.0 1.0 H1' B:DG7 4.2 0.0 1.0 C8 A:DXB21 4.2 0.0 1.0 N3 B:DG7 4.3 0.0 1.0 H22 B:DG7 4.3 0.0 1.0 N2 B:DG7 4.3 0.0 1.0 H22 B:DG6 4.4 0.0 1.0 N2 B:DG6 4.4 0.0 1.0 O8 B:DXB19 4.5 0.0 1.0 C2 B:DXB19 4.5 0.0 1.0 C2 A:DXB21 4.5 0.0 1.0 C1 B:DDA11 4.5 0.0 1.0 H21 B:DG7 4.6 0.0 1.0 C8A B:DXB19 4.6 0.0 1.0 C2 B:DG7 4.6 0.0 1.0 H2'' A:DC3 4.6 0.0 1.0 O1 B:DDA11 4.7 0.0 1.0 C2 A:DC3 4.8 0.0 1.0 C1 A:DDA11 4.8 0.0 1.0 C4A A:DXB21 4.8 0.0 1.0 H2' A:DC3 4.8 0.0 1.0 C1' A:DC3 4.8 0.0 1.0 O1 A:DDA11 4.8 0.0 1.0 H21 B:DXB19 4.9 0.0 1.0 O4' A:DC4 5.0 0.0 1.0 H21 A:DXB21 5.0 0.0 1.0

Magnesium binding site 2 out of 2 in the 4:2:1 Mithramycin:Mg++:D(Acccgggt)2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 4:2:1 Mithramycin:Mg++:D(Acccgggt)2 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg18 b:0.0 occ:1.00 O9 B:DXB20 1.7 0.0 1.0 O1 A:DXB22 2.0 0.0 1.0 O1 B:DXB20 2.1 0.0 1.0 O9 A:DXB22 2.3 0.0 1.0 C9 B:DXB20 2.8 0.0 1.0 HO8 B:DXB20 2.9 0.0 1.0 C1 B:DXB20 3.1 0.0 1.0 C1 A:DXB22 3.1 0.0 1.0 H1 A:DDA15 3.3 0.0 1.0 C9A B:DXB20 3.4 0.0 1.0 C9 A:DXB22 3.4 0.0 1.0 HO8 A:DXB22 3.6 0.0 1.0 O8 B:DXB20 3.7 0.0 1.0 C9A A:DXB22 3.7 0.0 1.0 O2 B:DC3 3.8 0.0 1.0 H1 B:DDA15 3.8 0.0 1.0 C8A B:DXB20 3.9 0.0 1.0 H22 A:DG7 3.9 0.0 1.0 H1' B:DC3 4.0 0.0 1.0 H21 A:DG6 4.1 0.0 1.0 H1' A:DG7 4.1 0.0 1.0 N3 A:DG7 4.1 0.0 1.0 C8 B:DXB20 4.2 0.0 1.0 N2 A:DG7 4.3 0.0 1.0 C1 A:DDA15 4.4 0.0 1.0 C2 A:DXB22 4.4 0.0 1.0 H22 A:DG6 4.4 0.0 1.0 N2 A:DG6 4.5 0.0 1.0 C2 B:DXB20 4.5 0.0 1.0 H2'' B:DC3 4.5 0.0 1.0 O1 A:DDA15 4.5 0.0 1.0 O8 A:DXB22 4.6 0.0 1.0 C2 A:DG7 4.6 0.0 1.0 H21 A:DG7 4.6 0.0 1.0 C8A A:DXB22 4.7 0.0 1.0 H21 A:DXB22 4.7 0.0 1.0 C4A B:DXB20 4.8 0.0 1.0 C1 B:DDA15 4.8 0.0 1.0 O1 B:DDA15 4.8 0.0 1.0 C2 B:DC3 4.9 0.0 1.0 H5 A:DDA15 4.9 0.0 1.0 O4' B:DC4 4.9 0.0 1.0 C1' B:DC3 5.0 0.0 1.0

M.A.Keniry, E.A.Owen, R.H.Shafer. The Three-Dimensional Structure of the 4:1 Mithramycin:D(Acccgggt)2 Complex: Evidence For An Interaction Between the E Saccharides Biopolymers V. 54 104 2000.
ISSN: ISSN 0006-3525
PubMed: 10861371
DOI: 10.1002/1097-0282(200008)54:2<104::AID-BIP3>3.0.CO;2-2