Magnesium in PDB 1cc0: Crystal Structure of the Rhoa.Gdp-Rhogdi Complex

The structure of Crystal Structure of the Rhoa.Gdp-Rhogdi Complex, PDB code: 1cc0 was solved by K.L.Longenecker, P.Read, U.Derewenda, Z.Dauter, S.Garrard, L.Walker, A.V.Somlyo, A.P.Somlyo, R.K.Nakamoto, Z.S.Derewenda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	N/A / 5.00
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	139.300, 139.300, 253.100, 90.00, 90.00, 120.00
R / Rfree (%)	n/a / n/a

The binding sites of Magnesium atom in the Crystal Structure of the Rhoa.Gdp-Rhogdi Complex (pdb code 1cc0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Rhoa.Gdp-Rhogdi Complex, PDB code: 1cc0:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the Rhoa.Gdp-Rhogdi Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Rhoa.Gdp-Rhogdi Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:35.0 occ:1.00 O2B A:GDP201 2.0 35.0 1.0 O A:THR37 2.2 35.0 1.0 OG1 A:THR19 2.3 35.0 1.0 PB A:GDP201 3.1 35.0 1.0 CB A:THR19 3.3 35.0 1.0 O3B A:GDP201 3.4 35.0 1.0 C A:THR37 3.4 35.0 1.0 O2A A:GDP201 3.9 35.0 1.0 CA A:THR37 4.1 35.0 1.0 N A:THR19 4.1 35.0 1.0 O A:PRO36 4.1 35.0 1.0 O1B A:GDP201 4.2 35.0 1.0 O3A A:GDP201 4.2 35.0 1.0 CA A:THR19 4.3 35.0 1.0 CG2 A:THR19 4.4 35.0 1.0 N A:VAL38 4.4 35.0 1.0 OD2 A:ASP59 4.4 35.0 1.0 OD1 A:ASP59 4.4 35.0 1.0 PA A:GDP201 4.5 35.0 1.0 CA A:VAL38 4.6 35.0 1.0 O A:THR60 4.6 35.0 1.0 O1A A:GDP201 4.7 35.0 1.0 CG2 A:THR37 4.8 35.0 1.0 CG A:ASP59 4.8 35.0 1.0 NE2 A:GLN63 4.9 35.0 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the Rhoa.Gdp-Rhogdi Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Rhoa.Gdp-Rhogdi Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg302 b:35.0 occ:1.00 O2B C:GDP202 2.0 35.0 1.0 O C:THR37 2.2 35.0 1.0 OG1 C:THR19 2.3 35.0 1.0 PB C:GDP202 3.1 35.0 1.0 CB C:THR19 3.3 35.0 1.0 O3B C:GDP202 3.4 35.0 1.0 C C:THR37 3.4 35.0 1.0 O2A C:GDP202 3.9 35.0 1.0 CA C:THR37 4.1 35.0 1.0 N C:THR19 4.1 35.0 1.0 O C:PRO36 4.1 35.0 1.0 O1B C:GDP202 4.2 35.0 1.0 O3A C:GDP202 4.2 35.0 1.0 CA C:THR19 4.3 35.0 1.0 CG2 C:THR19 4.4 35.0 1.0 N C:VAL38 4.4 35.0 1.0 OD2 C:ASP59 4.4 35.0 1.0 OD1 C:ASP59 4.4 35.0 1.0 PA C:GDP202 4.5 35.0 1.0 CA C:VAL38 4.6 35.0 1.0 O C:THR60 4.6 35.0 1.0 O1A C:GDP202 4.7 35.0 1.0 CG2 C:THR37 4.8 35.0 1.0 CG C:ASP59 4.8 35.0 1.0 NE2 C:GLN63 4.9 35.0 1.0

K.Longenecker, P.Read, U.Derewenda, Z.Dauter, X.Liu, S.Garrard, L.Walker, A.V.Somlyo, R.K.Nakamoto, A.P.Somlyo, Z.S.Derewenda. How Rhogdi Binds Rho. Acta Crystallogr.,Sect.D V. 55 1503 1999.
ISSN: ISSN 0907-4449
PubMed: 10489445
DOI: 10.1107/S090744499900801X