Atomistry » Magnesium » PDB 1c5u-1cxz » 1cm8
Atomistry »
  Magnesium »
    PDB 1c5u-1cxz »
      1cm8 »

Magnesium in PDB 1cm8: Phosphorylated Map Kinase P38-Gamma

Protein crystallography data

The structure of Phosphorylated Map Kinase P38-Gamma, PDB code: 1cm8 was solved by S.Bellon, M.J.Fitzgibbon, T.Fox, H.M.Hsiao, K.P.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 63.500, 66.820, 206.020, 90.00, 90.00, 90.00
R / Rfree (%) 23.2 / 28.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Phosphorylated Map Kinase P38-Gamma (pdb code 1cm8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Phosphorylated Map Kinase P38-Gamma, PDB code: 1cm8:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 1cm8

Go back to Magnesium Binding Sites List in 1cm8
Magnesium binding site 1 out of 4 in the Phosphorylated Map Kinase P38-Gamma


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Phosphorylated Map Kinase P38-Gamma within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:39.3
occ:1.00
O2G A:ANP400 2.1 64.3 1.0
OD1 A:ASN158 2.1 37.2 1.0
O2A A:ANP400 2.3 39.7 1.0
N3B A:ANP400 2.5 55.7 1.0
PG A:ANP400 2.8 66.7 1.0
O A:HOH2039 2.9 59.3 1.0
OD2 A:ASP171 3.0 39.8 1.0
CG A:ASN158 3.3 43.2 1.0
PA A:ANP400 3.5 45.1 1.0
C5' A:ANP400 3.8 40.8 1.0
O A:GLY157 3.8 39.6 1.0
O1G A:ANP400 3.8 65.3 1.0
PB A:ANP400 3.8 53.0 1.0
CG A:ASP171 3.9 44.8 1.0
O5' A:ANP400 4.0 44.3 1.0
ND2 A:ASN158 4.0 34.9 1.0
O3G A:ANP400 4.1 61.8 1.0
O3A A:ANP400 4.1 46.4 1.0
CB A:ASP171 4.2 42.7 1.0
CE A:LYS155 4.2 44.1 1.0
C A:GLY157 4.2 37.1 1.0
CB A:ASN158 4.4 40.1 1.0
CA A:ASN158 4.4 38.0 1.0
N A:ASN158 4.5 35.9 1.0
O3' A:ANP400 4.7 51.0 1.0
O2B A:ANP400 4.7 44.5 1.0
C3' A:ANP400 4.7 44.4 1.0
O1A A:ANP400 4.8 43.3 1.0
NZ A:LYS155 4.8 48.4 1.0
O1B A:ANP400 4.8 55.0 1.0
C4' A:ANP400 4.8 40.7 1.0

Magnesium binding site 2 out of 4 in 1cm8

Go back to Magnesium Binding Sites List in 1cm8
Magnesium binding site 2 out of 4 in the Phosphorylated Map Kinase P38-Gamma


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Phosphorylated Map Kinase P38-Gamma within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:42.8
occ:1.00
OD1 A:ASP171 2.3 47.1 1.0
O3G A:ANP400 2.5 61.8 1.0
O2B A:ANP400 2.6 44.5 1.0
O A:HOH2153 2.7 48.9 1.0
O A:HOH2152 2.7 45.1 1.0
OD2 A:ASP171 2.8 39.8 1.0
CG A:ASP171 2.9 44.8 1.0
PG A:ANP400 3.8 66.7 1.0
CA A:GLY173 3.8 46.8 1.0
PB A:ANP400 3.9 53.0 1.0
N3B A:ANP400 4.1 55.7 1.0
N A:GLY173 4.2 45.2 1.0
NZ A:LYS56 4.3 41.3 1.0
C A:GLY173 4.4 47.4 1.0
CB A:ASP171 4.4 42.7 1.0
O2G A:ANP400 4.5 64.3 1.0
O A:HOH2111 4.6 58.9 1.0
N A:LEU174 4.8 45.5 1.0
O3A A:ANP400 4.8 46.4 1.0
O1G A:ANP400 5.0 65.3 1.0
O A:GLY173 5.0 49.5 1.0

Magnesium binding site 3 out of 4 in 1cm8

Go back to Magnesium Binding Sites List in 1cm8
Magnesium binding site 3 out of 4 in the Phosphorylated Map Kinase P38-Gamma


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Phosphorylated Map Kinase P38-Gamma within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1401

b:41.3
occ:1.00
O2G B:ANP1400 2.1 64.1 1.0
OD1 B:ASN1158 2.1 35.2 1.0
O2A B:ANP1400 2.3 44.7 1.0
N3B B:ANP1400 2.6 57.4 1.0
PG B:ANP1400 2.8 63.6 1.0
OD2 B:ASP1171 3.0 36.4 1.0
CG B:ASN1158 3.3 40.5 1.0
PA B:ANP1400 3.6 46.4 1.0
O B:GLY1157 3.7 39.7 1.0
C5' B:ANP1400 3.7 40.8 1.0
O1G B:ANP1400 3.8 65.6 1.0
O B:HOH2185 3.8 53.3 1.0
PB B:ANP1400 3.9 56.7 1.0
O5' B:ANP1400 4.0 45.8 1.0
ND2 B:ASN1158 4.0 38.6 1.0
CG B:ASP1171 4.0 45.7 1.0
O3G B:ANP1400 4.1 61.2 1.0
CE B:LYS1155 4.1 43.9 1.0
C B:GLY1157 4.2 36.8 1.0
O3A B:ANP1400 4.2 48.9 1.0
CB B:ASP1171 4.2 42.5 1.0
CB B:ASN1158 4.4 38.4 1.0
CA B:ASN1158 4.5 37.8 1.0
N B:ASN1158 4.5 33.8 1.0
O3' B:ANP1400 4.6 46.6 1.0
C3' B:ANP1400 4.7 41.2 1.0
NZ B:LYS1155 4.8 47.0 1.0
O2B B:ANP1400 4.8 48.8 1.0
O1A B:ANP1400 4.8 41.8 1.0
C4' B:ANP1400 4.8 40.9 1.0
O1B B:ANP1400 4.9 55.9 1.0
CA B:GLY1157 5.0 37.5 1.0

Magnesium binding site 4 out of 4 in 1cm8

Go back to Magnesium Binding Sites List in 1cm8
Magnesium binding site 4 out of 4 in the Phosphorylated Map Kinase P38-Gamma


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Phosphorylated Map Kinase P38-Gamma within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1402

b:48.9
occ:1.00
OD1 B:ASP1171 2.3 45.0 1.0
O3G B:ANP1400 2.5 61.2 1.0
O B:HOH2118 2.6 50.7 1.0
O2B B:ANP1400 2.6 48.8 1.0
OD2 B:ASP1171 2.8 36.4 1.0
CG B:ASP1171 2.9 45.7 1.0
O B:HOH2016 3.5 39.0 1.0
PG B:ANP1400 3.7 63.6 1.0
CA B:GLY1173 3.8 47.2 1.0
PB B:ANP1400 3.9 56.7 1.0
N3B B:ANP1400 4.0 57.4 1.0
N B:GLY1173 4.2 44.6 1.0
NZ B:LYS1056 4.3 41.7 1.0
CB B:ASP1171 4.4 42.5 1.0
C B:GLY1173 4.4 49.0 1.0
O2G B:ANP1400 4.4 64.1 1.0
O B:HOH2037 4.5 64.4 1.0
N B:LEU1174 4.8 47.5 1.0
O3A B:ANP1400 4.8 48.9 1.0
O1G B:ANP1400 4.9 65.6 1.0
O B:GLY1173 5.0 50.1 1.0

Reference:

S.Bellon, M.J.Fitzgibbon, T.Fox, H.M.Hsiao, K.P.Wilson. The Structure of Phosphorylated P38GAMMA Is Monomeric and Reveals A Conserved Activation-Loop Conformation. Structure Fold.Des. V. 7 1057 1999.
ISSN: ISSN 0969-2126
PubMed: 10508788
DOI: 10.1016/S0969-2126(99)80173-7
Page generated: Tue Aug 13 02:29:59 2024

Last articles

Mg in 8G97
Mg in 8G6P
Mg in 8G8Z
Mg in 8G7I
Mg in 8G7G
Mg in 8G7F
Mg in 8G7H
Mg in 8G6A
Mg in 8G7E
Mg in 8FWJ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy