Atomistry » Magnesium » PDB 1c5u-1cxz » 1cp8
Atomistry »
  Magnesium »
    PDB 1c5u-1cxz »
      1cp8 »

Magnesium in PDB 1cp8: uc(Nmr) Structure of Dna (5'-D(Ttggccaa)2-3') Complexed with Novel Antitumor Drug UCH9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the uc(Nmr) Structure of Dna (5'-D(Ttggccaa)2-3') Complexed with Novel Antitumor Drug UCH9 (pdb code 1cp8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the uc(Nmr) Structure of Dna (5'-D(Ttggccaa)2-3') Complexed with Novel Antitumor Drug UCH9, PDB code: 1cp8:

Magnesium binding site 1 out of 1 in 1cp8

Go back to Magnesium Binding Sites List in 1cp8
Magnesium binding site 1 out of 1 in the uc(Nmr) Structure of Dna (5'-D(Ttggccaa)2-3') Complexed with Novel Antitumor Drug UCH9


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of uc(Nmr) Structure of Dna (5'-D(Ttggccaa)2-3') Complexed with Novel Antitumor Drug UCH9 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg14

b:0.0
occ:1.00
O9 A:DXA14 2.4 0.0 1.0
O9 B:DXA15 2.4 0.0 1.0
O1 B:DXA15 2.5 0.0 1.0
O1 A:DXA14 2.7 0.0 1.0
HO8 A:DXA14 3.1 0.0 1.0
HO8 B:DXA15 3.3 0.0 1.0
O2 B:DC5 3.4 0.0 1.0
C9 B:DXA15 3.5 0.0 1.0
C9 A:DXA14 3.5 0.0 1.0
O2 A:DC5 3.5 0.0 1.0
C1 B:DXA15 3.6 0.0 1.0
H1' B:DC5 3.6 20.0 1.0
O4' B:DC6 3.7 0.0 1.0
C1 A:DXA14 3.7 0.0 1.0
H1' A:DC5 3.8 20.0 1.0
H22 A:DG4 3.9 0.0 1.0
O8 A:DXA14 4.0 0.0 1.0
C9A B:DXA15 4.0 0.0 1.0
H22 B:DG4 4.0 0.0 1.0
O4' A:DC6 4.1 0.0 1.0
O8 B:DXA15 4.1 0.0 1.0
C9A A:DXA14 4.1 0.0 1.0
H21 A:DG4 4.2 0.0 1.0
H2'' B:DC5 4.2 20.0 1.0
H1' B:DC6 4.2 20.0 1.0
H21 B:DG4 4.3 0.0 1.0
H5' B:DC6 4.4 20.0 1.0
H4' B:DC6 4.4 20.0 1.0
H2'' A:DC5 4.5 20.0 1.0
N2 A:DG4 4.5 0.0 1.0
H22 B:DDA9 4.5 0.2 1.0
C2 B:DC5 4.5 0.0 1.0
C1' B:DC6 4.5 0.0 1.0
N2 B:DG4 4.6 0.0 1.0
H1' A:DC6 4.6 20.0 1.0
C4' B:DC6 4.6 0.0 1.0
C1' B:DC5 4.6 0.0 1.0
C8A A:DXA14 4.6 0.0 1.0
H5' A:DC6 4.7 20.0 1.0
C2 A:DC5 4.7 0.0 1.0
C8A B:DXA15 4.7 0.0 1.0
H22 A:DDA9 4.7 0.2 1.0
H4' A:DC6 4.7 20.0 1.0
C1' A:DC5 4.8 0.0 1.0
C8 A:DXA14 4.8 0.0 1.0
C1' A:DC6 4.9 0.0 1.0
C2 B:DXA15 4.9 0.0 1.0
C8 B:DXA15 4.9 0.0 1.0
C4' A:DC6 4.9 0.0 1.0
C2' B:DC5 4.9 0.0 1.0

Reference:

R.Katahira, M.Katahira, Y.Yamashita, H.Ogawa, Y.Kyogoku, M.Yoshida. Solution Structure of the Novel Antitumor Drug UCH9 Complexed with D(Ttggccaa)2 As Determined By uc(Nmr). Nucleic Acids Res. V. 26 744 1998.
ISSN: ISSN 0305-1048
PubMed: 9443966
DOI: 10.1093/NAR/26.3.744
Page generated: Tue Aug 13 02:30:15 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy