Magnesium in PDB 1d0y: Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O- Nitrophenyl Aminoethyldiphosphate Beryllium Fluoride.

The structure of Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O- Nitrophenyl Aminoethyldiphosphate Beryllium Fluoride., PDB code: 1d0y was solved by A.M.Gulick, C.B.Bauer, J.B.Thoden, E.Pate, R.G.Yount, I.Rayment, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 2.00
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	103.800, 180.300, 54.000, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The structure of Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O- Nitrophenyl Aminoethyldiphosphate Beryllium Fluoride. also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Magnesium atom in the Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O- Nitrophenyl Aminoethyldiphosphate Beryllium Fluoride. (pdb code 1d0y). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O- Nitrophenyl Aminoethyldiphosphate Beryllium Fluoride., PDB code: 1d0y:

Magnesium binding site 1 out of 1 in the Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O- Nitrophenyl Aminoethyldiphosphate Beryllium Fluoride.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O- Nitrophenyl Aminoethyldiphosphate Beryllium Fluoride. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg998 b:19.1 occ:1.00 O A:HOH1688 1.9 10.9 1.0 OB2 A:ONP999 1.9 15.8 1.0 OG1 A:THR186 2.0 29.1 1.0 OG A:SER237 2.0 21.2 1.0 F2 A:ONP999 2.0 18.2 1.0 O A:HOH1023 2.2 20.1 1.0 CB A:SER237 3.2 15.6 1.0 PB A:ONP999 3.2 20.7 1.0 CB A:THR186 3.2 26.4 1.0 BE A:ONP999 3.3 79.6 1.0 OB3 A:ONP999 3.5 24.6 1.0 N A:SER237 3.8 16.9 1.0 N A:THR186 3.9 15.0 1.0 F1 A:ONP999 4.0 20.3 1.0 OD1 A:ASP454 4.0 22.6 1.0 CA A:SER237 4.1 12.6 1.0 CA A:THR186 4.1 16.6 1.0 OA2 A:ONP999 4.1 17.6 1.0 CG2 A:THR186 4.2 15.8 1.0 OD2 A:ASP454 4.2 18.3 1.0 OA3 A:ONP999 4.2 17.5 1.0 OB1 A:ONP999 4.2 12.4 1.0 F3 A:ONP999 4.4 21.9 1.0 O A:HOH1332 4.4 48.5 1.0 O A:HOH1170 4.5 23.3 1.0 PA A:ONP999 4.5 22.0 1.0 OA1 A:ONP999 4.5 18.0 1.0 CG A:ASP454 4.5 27.9 1.0 CB A:LYS185 4.7 17.2 1.0 O A:HOH1432 4.8 57.3 1.0 NZ A:LYS185 4.8 14.1 1.0 CE A:LYS185 4.8 19.5 1.0 ND2 A:ASN233 4.8 28.2 1.0 O A:HOH1221 4.9 41.1 1.0 O A:ASN235 4.9 28.5 1.0 C A:SER236 4.9 28.6 1.0

A.M.Gulick, C.B.Bauer, J.B.Thoden, E.Pate, R.G.Yount, I.Rayment. X-Ray Structures of the Dictyostelium Discoideum Myosin Motor Domain with Six Non-Nucleotide Analogs. J.Biol.Chem. V. 275 398 2000.
ISSN: ISSN 0021-9258
PubMed: 10617631
DOI: 10.1074/JBC.275.1.398