Magnesium in PDB 1d33: Formaldehyde Cross-Links Daunorubicin and Dna Efficiently: Hplc and X-Ray Diffraction Studies

The structure of Formaldehyde Cross-Links Daunorubicin and Dna Efficiently: Hplc and X-Ray Diffraction Studies, PDB code: 1d33 was solved by A.H.-J.Wang, Y.-G.Gao, Y.-C.Liaw, Y.-K.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	N/A / 1.50
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	27.943, 27.943, 52.243, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The binding sites of Magnesium atom in the Formaldehyde Cross-Links Daunorubicin and Dna Efficiently: Hplc and X-Ray Diffraction Studies (pdb code 1d33). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Formaldehyde Cross-Links Daunorubicin and Dna Efficiently: Hplc and X-Ray Diffraction Studies, PDB code: 1d33:

Magnesium binding site 1 out of 1 in the Formaldehyde Cross-Links Daunorubicin and Dna Efficiently: Hplc and X-Ray Diffraction Studies


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Formaldehyde Cross-Links Daunorubicin and Dna Efficiently: Hplc and X-Ray Diffraction Studies within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg8 b:23.4 occ:1.00 O A:HOH11 2.7 31.4 1.0 N7 A:DG6 2.7 7.5 1.0 O A:HOH10 2.8 30.6 1.0 O A:HOH9 2.9 28.1 1.0 O4 A:DM17 3.1 10.2 1.0 O6 A:DM17 3.2 9.3 1.0 C21 A:DM17 3.5 10.6 1.0 C8 A:DG6 3.6 7.2 1.0 C5 A:DG6 3.7 7.0 1.0 O6 A:DG6 3.9 7.2 1.0 C4 A:DM17 4.0 9.6 1.0 C6 A:DM17 4.0 8.7 1.0 O A:HOH67 4.0 44.1 1.0 C6 A:DG6 4.2 6.7 1.0 C2' A:DC5 4.4 11.2 1.0 C5 A:DM17 4.4 9.3 1.0 O A:HOH62 4.4 48.5 1.0 O A:HOH66 4.6 45.1 1.0 O3' A:DC5 4.6 12.3 1.0 OP2 A:DG6 4.7 16.5 1.0 N9 A:DG6 4.8 7.5 1.0 O8 A:DM17 4.8 8.6 1.0 C4 A:DG6 4.9 7.1 1.0 O A:HOH23 4.9 32.9 1.0 O A:HOH22 5.0 47.2 1.0

A.H.Wang, Y.G.Gao, Y.C.Liaw, Y.K.Li. Formaldehyde Cross-Links Daunorubicin and Dna Efficiently: Hplc and X-Ray Diffraction Studies. Biochemistry V. 30 3812 1991.
ISSN: ISSN 0006-2960
PubMed: 2018756
DOI: 10.1021/BI00230A002