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Magnesium in PDB 1d35: Facile Formation of A Crosslinked Adduct Between Dna and the Daunorubicin Derivative MAR70 Mediated By Formaldehyde: Molecular Structure of the MAR70-D(Cgtnacg) Covalent Adduc

Protein crystallography data

The structure of Facile Formation of A Crosslinked Adduct Between Dna and the Daunorubicin Derivative MAR70 Mediated By Formaldehyde: Molecular Structure of the MAR70-D(Cgtnacg) Covalent Adduc, PDB code: 1d35 was solved by Y.-G.Gao, Y.-C.Liaw, Y.-K.Li, G.A.Van Der Marel, J.H.Van Boom, A.H.-J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 1.30
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 28.120, 28.120, 52.980, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Facile Formation of A Crosslinked Adduct Between Dna and the Daunorubicin Derivative MAR70 Mediated By Formaldehyde: Molecular Structure of the MAR70-D(Cgtnacg) Covalent Adduc (pdb code 1d35). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Facile Formation of A Crosslinked Adduct Between Dna and the Daunorubicin Derivative MAR70 Mediated By Formaldehyde: Molecular Structure of the MAR70-D(Cgtnacg) Covalent Adduc, PDB code: 1d35:

Magnesium binding site 1 out of 1 in 1d35

Go back to Magnesium Binding Sites List in 1d35
Magnesium binding site 1 out of 1 in the Facile Formation of A Crosslinked Adduct Between Dna and the Daunorubicin Derivative MAR70 Mediated By Formaldehyde: Molecular Structure of the MAR70-D(Cgtnacg) Covalent Adduc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Facile Formation of A Crosslinked Adduct Between Dna and the Daunorubicin Derivative MAR70 Mediated By Formaldehyde: Molecular Structure of the MAR70-D(Cgtnacg) Covalent Adduc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg8

b:22.7
occ:1.00
N7 A:DG6 2.7 9.6 1.0
O A:HOH11 2.8 30.7 1.0
O A:HOH10 2.9 27.7 1.0
O4 A:MAR7 2.9 11.2 1.0
O A:HOH9 3.0 25.6 1.0
O6 A:MAR7 3.0 10.6 1.0
C21 A:MAR7 3.6 11.3 1.0
C8 A:DG6 3.7 9.5 1.0
C5 A:DG6 3.7 9.3 1.0
O6 A:DG6 3.7 9.4 1.0
C4 A:MAR7 3.8 10.8 1.0
C6 A:MAR7 3.8 10.1 1.0
C6 A:DG6 4.1 9.2 1.0
C2' A:DC5 4.2 10.4 1.0
C5 A:MAR7 4.2 10.6 1.0
OP2 A:DG6 4.7 15.4 1.0
O3' A:DC5 4.7 11.0 1.0
O8 A:MAR7 4.7 9.7 1.0
N9 A:DG6 4.9 9.4 1.0
C4 A:DG6 4.9 9.2 1.0
C3 A:MAR7 4.9 11.1 1.0
C7 A:MAR7 5.0 9.8 1.0
C3' A:DC5 5.0 10.7 1.0

Reference:

Y.G.Gao, Y.C.Liaw, Y.K.Li, G.A.Van Der Marel, J.H.Van Boom, A.H.Wang. Facile Formation of A Crosslinked Adduct Between Dna and the Daunorubicin Derivative MAR70 Mediated By Formaldehyde: Molecular Structure of the MAR70-D(Cgtnacg) Covalent Adduct. Proc.Natl.Acad.Sci.Usa V. 88 4845 1991.
ISSN: ISSN 0027-8424
PubMed: 2052564
DOI: 10.1073/PNAS.88.11.4845
Page generated: Mon Dec 14 05:49:53 2020

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