Atomistry » Magnesium » PDB 1cyq-1dak » 1d5c
Atomistry »
  Magnesium »
    PDB 1cyq-1dak »
      1d5c »

Magnesium in PDB 1d5c: Crystal Structure of Plasmodium Falciparum RAB6 Complexed with Gdp

Protein crystallography data

The structure of Crystal Structure of Plasmodium Falciparum RAB6 Complexed with Gdp, PDB code: 1d5c was solved by D.Chattopadhyay, G.Langsley, M.Carson, R.Recacha, L.Delucas, C.Smith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 9.94 / 2.30
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 81.200, 81.200, 90.840, 90.00, 90.00, 90.00
R / Rfree (%) 21.4 / 24.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Plasmodium Falciparum RAB6 Complexed with Gdp (pdb code 1d5c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Plasmodium Falciparum RAB6 Complexed with Gdp, PDB code: 1d5c:

Magnesium binding site 1 out of 1 in 1d5c

Go back to Magnesium Binding Sites List in 1d5c
Magnesium binding site 1 out of 1 in the Crystal Structure of Plasmodium Falciparum RAB6 Complexed with Gdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Plasmodium Falciparum RAB6 Complexed with Gdp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg300

b:33.4
occ:1.00
O A:HOH351 2.0 30.3 1.0
O A:HOH350 2.0 33.2 1.0
O3B A:GDP201 2.1 23.3 1.0
O A:HOH353 2.1 35.3 1.0
O A:HOH352 2.1 29.3 1.0
OG1 A:THR25 2.2 28.7 1.0
PB A:GDP201 3.2 27.0 1.0
O1B A:GDP201 3.4 25.4 1.0
CB A:THR25 3.4 28.4 1.0
N A:THR25 4.1 26.2 1.0
O A:THR43 4.1 51.3 1.0
O A:HOH354 4.1 36.2 1.0
OD2 A:ASP66 4.2 36.3 1.0
O1A A:GDP201 4.2 28.6 1.0
O2B A:GDP201 4.2 25.4 1.0
OD1 A:ASP66 4.2 35.1 1.0
O3A A:GDP201 4.3 25.6 1.0
CA A:THR25 4.3 26.7 1.0
O A:HOH302 4.3 30.1 1.0
CG2 A:THR25 4.4 25.1 1.0
O A:HOH355 4.5 50.9 1.0
O A:THR67 4.5 31.9 1.0
CG A:ASP66 4.6 34.6 1.0
PA A:GDP201 4.7 26.7 1.0
OG1 A:THR43 4.8 56.2 1.0
O2A A:GDP201 4.8 26.3 1.0
O A:HOH332 4.8 35.9 1.0
O A:GLY45 4.8 38.0 1.0
OH A:TYR40 4.8 53.3 0.0
CE A:LYS24 4.9 24.6 1.0
NZ A:LYS24 5.0 24.4 1.0
CB A:LYS24 5.0 23.7 1.0

Reference:

D.Chattopadhyay, G.Langsley, M.Carson, R.Recacha, L.Delucas, C.Smith. Structure of the Nucleotide-Binding Domain of Plasmodium Falciparum RAB6 in the Gdp-Bound Form. Acta Crystallogr.,Sect.D V. 56 937 2000.
ISSN: ISSN 0907-4449
PubMed: 10944329
DOI: 10.1107/S0907444900007575
Page generated: Tue Aug 13 02:36:13 2024

Last articles

Na in 2QB4
Na in 2QD6
Na in 2QCI
Na in 2QA0
Na in 2Q96
Na in 2Q16
Na in 2Q95
Na in 2Q94
Na in 2Q93
Na in 2Q6A
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy