Magnesium in the structure of Crystal Structure of Plasmodium Falciparum RAB6 Complexed With Gdp (pdb 1d5c)

The binding sites of Magnesium atom in the structure of Crystal Structure of Plasmodium Falciparum RAB6 Complexed With Gdp (pdb code 1d5c). This binding sites where shown with 5.0 Angstroms radius around Magnesium atom. The 1d5c structure was solved by D.CHATTOPADHYAY, G.LANGSLEY, M.CARSON, R.RECACHA, L.DELUCAS, C.SMITH, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 9.9-2.3 Space group P43212 a (A) 81.200 b (A) 81.200 c (A) 90.840 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 21.4 Rfree (%) 24.6 Magnesium Binding Sites: Magnesium binding site 1 out of 1 in 1d5c Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Magnesium in the PDB 1d5c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Lys24, A: Thr25, A: Tyr40, A: Thr43, A: Gly45, A: Asp66, A: Thr67, A: Gdp201, A: Hoh302, A: Hoh332, A: Hoh350, A: Hoh351, A: Hoh352, A: Hoh353, A: Hoh354, A: Hoh355, conact list: Atom Atom Distance (A) Mg CB A:Lys24 4.99 Mg CE A:Lys24 4.91 Mg NZ A:Lys24 4.98 Mg N A:Thr25 4.08 Mg CB A:Thr25 3.38 Mg CG2 A:Thr25 4.41 Mg OG1 A:Thr25 2.18 Mg CA A:Thr25 4.30 Mg OH A:Tyr40 4.83 Mg O A:Thr43 4.09 Mg OG1 A:Thr43 4.75 Mg O A:Gly45 4.82 Mg OD2 A:Asp66 4.17 Mg OD1 A:Asp66 4.24 Mg CG A:Asp66 4.58 Mg O A:Thr67 4.53 Mg O3B A:Gdp201 2.07 Mg PA A:Gdp201 4.65 Mg O2A A:Gdp201 4.78 Mg O1B A:Gdp201 3.36 Mg PB A:Gdp201 3.23 Mg O2B A:Gdp201 4.22 Mg O3A A:Gdp201 4.28 Mg O1A A:Gdp201 4.19 Mg O A:Hoh302 4.32 Mg O A:Hoh332 4.80 Mg O A:Hoh350 2.04 Mg O A:Hoh351 2.00 Mg O A:Hoh352 2.14 Mg O A:Hoh353 2.11 Mg O A:Hoh354 4.14 Mg O A:Hoh355 4.49 interactive model: