Magnesium in PDB 1d60: The Structure of the B-Dna Decamer C-C-A-A-C-I-T-T-G-G: Trigonal Form

The structure of The Structure of the B-Dna Decamer C-C-A-A-C-I-T-T-G-G: Trigonal Form, PDB code: 1d60 was solved by A.Lipanov, M.L.Kopka, M.Kaczor-Grzeskowiak, J.Quintana, R.E.Dickerson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 2.20
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	33.230, 33.230, 94.770, 90.00, 90.00, 120.00
R / Rfree (%)	n/a / n/a

The binding sites of Magnesium atom in the The Structure of the B-Dna Decamer C-C-A-A-C-I-T-T-G-G: Trigonal Form (pdb code 1d60). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Structure of the B-Dna Decamer C-C-A-A-C-I-T-T-G-G: Trigonal Form, PDB code: 1d60:

Magnesium binding site 1 out of 1 in the The Structure of the B-Dna Decamer C-C-A-A-C-I-T-T-G-G: Trigonal Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of the B-Dna Decamer C-C-A-A-C-I-T-T-G-G: Trigonal Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg21 b:31.3 occ:1.00 O B:HOH59 1.9 43.3 1.0 O B:HOH63 2.0 32.5 1.0 O B:HOH61 2.0 44.7 1.0 O B:HOH60 2.0 45.6 1.0 O B:HOH62 2.0 36.6 1.0 O B:HOH58 2.1 40.6 1.0 OP1 B:DT17 4.1 7.9 1.0 OP2 B:DT17 4.4 1.9 1.0 P B:DT17 4.6 11.9 1.0 O B:HOH35 4.8 21.0 1.0 O5' B:DT17 4.8 8.1 1.0

A.Lipanov, M.L.Kopka, M.Kaczor-Grzeskowiak, J.Quintana, R.E.Dickerson. Structure of the B-Dna Decamer C-C-A-A-C-I-T-T-G-G in Two Different Space Groups: Conformational Flexibility of B-Dna. Biochemistry V. 32 1373 1993.
ISSN: ISSN 0006-2960
PubMed: 8448146
DOI: 10.1021/BI00056A024