Magnesium in PDB 1d8c: Malate Synthase G Complexed with Magnesium and Glyoxylate

All present enzymatic activity of Malate Synthase G Complexed with Magnesium and Glyoxylate:
4.1.3.2;

The structure of Malate Synthase G Complexed with Magnesium and Glyoxylate, PDB code: 1d8c was solved by B.R.Howard, J.A.Endrizzi, S.J.Remington, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	73.800, 88.700, 109.900, 90.00, 90.00, 90.00
R / Rfree (%)	17.5 / 27

The binding sites of Magnesium atom in the Malate Synthase G Complexed with Magnesium and Glyoxylate (pdb code 1d8c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Malate Synthase G Complexed with Magnesium and Glyoxylate, PDB code: 1d8c:

Magnesium binding site 1 out of 1 in the Malate Synthase G Complexed with Magnesium and Glyoxylate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Malate Synthase G Complexed with Magnesium and Glyoxylate within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3001 b:23.9 occ:1.00 O A:HOH1002 1.9 25.9 1.0 OD2 A:ASP455 2.0 19.4 1.0 OE1 A:GLU427 2.0 18.3 1.0 O1 A:GLV2000 2.1 23.4 1.0 O A:HOH1001 2.1 16.2 1.0 O3 A:GLV2000 2.1 21.9 1.0 C1 A:GLV2000 2.8 33.1 1.0 C2 A:GLV2000 2.8 33.8 1.0 CD A:GLU427 3.0 22.6 1.0 CG A:ASP455 3.1 18.6 1.0 OE2 A:GLU427 3.5 18.6 1.0 CB A:ASP455 3.5 18.7 1.0 NH1 A:ARG338 4.0 28.5 1.0 O2 A:GLV2000 4.0 28.5 1.0 NZ A:LYS392 4.0 29.7 1.0 OD1 A:ASP455 4.1 22.0 1.0 O A:HOH1117 4.1 52.2 1.0 OD2 A:ASP273 4.2 25.5 1.0 CG A:GLU427 4.3 15.1 1.0 CB A:ALA633 4.4 19.4 1.0 N A:ASP455 4.5 17.4 1.0 CE A:MSE425 4.5 21.9 1.0 OE1 A:GLU272 4.6 30.4 1.0 CA A:ASP455 4.6 15.3 1.0 CB A:GLU427 4.7 18.3 1.0 CA A:GLY452 4.8 24.6 1.0 O A:GLY452 4.9 17.8 1.0 CZ A:ARG338 5.0 23.9 1.0

B.R.Howard, J.A.Endrizzi, S.J.Remington. Crystal Structure of Escherichia Coli Malate Synthase G Complexed with Magnesium and Glyoxylate at 2.0 A Resolution: Mechanistic Implications. Biochemistry V. 39 3156 2000.
ISSN: ISSN 0006-2960
PubMed: 10715138
DOI: 10.1021/BI992519H