Magnesium in PDB 1day: Crystal Structure of A Binary Complex of Protein Kinase CK2 (Alpha-Subunit) and Mg-Gmppnp

All present enzymatic activity of Crystal Structure of A Binary Complex of Protein Kinase CK2 (Alpha-Subunit) and Mg-Gmppnp:
2.7.1.37;

The structure of Crystal Structure of A Binary Complex of Protein Kinase CK2 (Alpha-Subunit) and Mg-Gmppnp, PDB code: 1day was solved by K.Niefind, M.Puetter, B.Guerra, O.G.Issinger, D.Schomburg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	54.10 / 2.20
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	142.700, 58.820, 46.180, 90.00, 103.77, 90.00
R / Rfree (%)	21.2 / 29

The binding sites of Magnesium atom in the Crystal Structure of A Binary Complex of Protein Kinase CK2 (Alpha-Subunit) and Mg-Gmppnp (pdb code 1day). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Binary Complex of Protein Kinase CK2 (Alpha-Subunit) and Mg-Gmppnp, PDB code: 1day:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of A Binary Complex of Protein Kinase CK2 (Alpha-Subunit) and Mg-Gmppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Binary Complex of Protein Kinase CK2 (Alpha-Subunit) and Mg-Gmppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg341 b:40.0 occ:1.00 O A:HOH560 2.0 38.5 1.0 O3G A:GNP340 2.1 37.0 1.0 OD1 A:ASP175 2.1 24.8 1.0 O A:HOH362 2.1 38.1 1.0 OD2 A:ASP175 2.1 24.2 1.0 O2B A:GNP340 2.3 40.5 1.0 CG A:ASP175 2.4 26.3 1.0 PB A:GNP340 3.0 39.3 1.0 PG A:GNP340 3.0 39.7 1.0 N3B A:GNP340 3.2 39.6 1.0 O1G A:GNP340 3.5 39.1 1.0 MG A:MG342 3.6 28.4 1.0 O3A A:GNP340 3.8 40.1 1.0 CB A:ASP175 3.9 26.8 1.0 O A:HOH378 4.1 45.2 1.0 OD2 A:ASP156 4.1 30.8 1.0 NZ A:LYS68 4.2 38.6 1.0 O1B A:GNP340 4.3 41.3 1.0 O2G A:GNP340 4.3 39.5 1.0 CA A:GLY177 4.5 32.9 1.0 O2A A:GNP340 4.6 37.8 1.0 CE1 A:TYR50 4.6 61.3 1.0 N A:GLY177 4.6 31.5 1.0 PA A:GNP340 4.6 38.5 1.0 CA A:ASP175 4.7 29.4 1.0 ND2 A:ASN161 4.8 28.8 1.0 O A:ASP175 4.9 30.2 1.0 C A:ASP175 4.9 30.3 1.0 C A:GLY177 5.0 33.8 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of A Binary Complex of Protein Kinase CK2 (Alpha-Subunit) and Mg-Gmppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Binary Complex of Protein Kinase CK2 (Alpha-Subunit) and Mg-Gmppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg342 b:28.4 occ:1.00 O1G A:GNP340 1.8 39.1 1.0 O2A A:GNP340 1.9 37.8 1.0 OD2 A:ASP175 2.0 24.2 1.0 O A:HOH355 2.0 28.8 1.0 OD1 A:ASN161 2.2 27.6 1.0 PG A:GNP340 2.8 39.7 1.0 O3A A:GNP340 2.8 40.1 1.0 PA A:GNP340 2.9 38.5 1.0 CG A:ASP175 2.9 26.3 1.0 N3B A:GNP340 3.0 39.6 1.0 CG A:ASN161 3.2 28.7 1.0 CB A:ASP175 3.4 26.8 1.0 PB A:GNP340 3.5 39.3 1.0 ND2 A:ASN161 3.5 28.8 1.0 O3G A:GNP340 3.6 37.0 1.0 MG A:MG341 3.6 40.0 1.0 O5' A:GNP340 4.0 35.6 1.0 O1A A:GNP340 4.0 37.1 1.0 O2G A:GNP340 4.0 39.5 1.0 OD1 A:ASP175 4.0 24.8 1.0 C5' A:GNP340 4.1 33.1 1.0 O2B A:GNP340 4.2 40.5 1.0 CE A:LYS158 4.3 29.1 1.0 O3' A:GNP340 4.3 31.5 1.0 NZ A:LYS158 4.3 30.0 1.0 CB A:ASN161 4.5 28.3 1.0 O A:HOH362 4.6 38.1 1.0 O A:HIS160 4.6 29.1 1.0 OD2 A:ASP156 4.7 30.8 1.0 O1B A:GNP340 4.7 41.3 1.0 C3' A:GNP340 4.8 32.2 1.0 CA A:ASN161 4.8 27.4 1.0 CB A:HIS160 4.9 36.4 1.0 CA A:ASP175 4.9 29.4 1.0 N A:ASN161 4.9 29.0 1.0 C A:HIS160 5.0 31.2 1.0

K.Niefind, M.Putter, B.Guerra, O.G.Issinger, D.Schomburg. Gtp Plus Water Mimic Atp in the Active Site of Protein Kinase CK2. Nat.Struct.Biol. V. 6 1100 1999.
ISSN: ISSN 1072-8368
PubMed: 10581548
DOI: 10.1038/70033