Magnesium in PDB 1doa: Structure of the Rho Family Gtp-Binding Protein CDC42 in Complex with the Multifunctional Regulator Rhogdi

The structure of Structure of the Rho Family Gtp-Binding Protein CDC42 in Complex with the Multifunctional Regulator Rhogdi, PDB code: 1doa was solved by G.R.Hoffman, N.Nassar, R.C.Cerione, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.90 / 2.60
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	83.940, 83.940, 191.160, 90.00, 90.00, 120.00
R / Rfree (%)	25.7 / 32

The binding sites of Magnesium atom in the Structure of the Rho Family Gtp-Binding Protein CDC42 in Complex with the Multifunctional Regulator Rhogdi (pdb code 1doa). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of the Rho Family Gtp-Binding Protein CDC42 in Complex with the Multifunctional Regulator Rhogdi, PDB code: 1doa:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of the Rho Family Gtp-Binding Protein CDC42 in Complex with the Multifunctional Regulator Rhogdi


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Rho Family Gtp-Binding Protein CDC42 in Complex with the Multifunctional Regulator Rhogdi within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg199 b:66.2 occ:1.00 O A:HOH749 2.1 37.2 1.0 OG1 A:THR17 2.1 49.2 1.0 O A:THR35 2.3 44.8 1.0 O2B A:GDP198 2.6 49.7 1.0 O A:HOH701 2.9 36.6 1.0 OD1 A:ASP57 3.3 50.7 1.0 OD2 A:ASP57 3.4 47.5 1.0 CB A:THR17 3.5 48.6 1.0 C A:THR35 3.5 50.3 1.0 PB A:GDP198 3.6 54.2 1.0 O3B A:GDP198 3.7 49.5 1.0 CG A:ASP57 3.7 50.1 1.0 O A:THR58 3.8 50.3 1.0 N A:THR17 4.0 50.5 1.0 NZ A:LYS16 4.2 55.4 1.0 CA A:THR17 4.2 51.0 1.0 CA A:VAL36 4.3 44.5 1.0 N A:VAL36 4.4 48.0 1.0 O1B A:GDP198 4.4 39.8 1.0 CE A:LYS16 4.5 49.7 1.0 CG2 A:THR17 4.5 43.5 1.0 CG2 A:VAL36 4.5 36.0 1.0 CA A:THR35 4.6 51.5 1.0 O A:PRO34 4.6 52.0 1.0 CB A:LYS16 4.7 51.8 1.0 O3A A:GDP198 4.8 57.3 1.0 C A:THR58 4.9 52.0 1.0 C A:LYS16 4.9 51.5 1.0

Magnesium binding site 2 out of 2 in the Structure of the Rho Family Gtp-Binding Protein CDC42 in Complex with the Multifunctional Regulator Rhogdi


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the Rho Family Gtp-Binding Protein CDC42 in Complex with the Multifunctional Regulator Rhogdi within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg200 b:15.2 occ:0.33 ND1 A:HIS0 1.8 41.3 1.0 CE1 A:HIS0 2.4 45.5 1.0 O A:HOH709 2.9 56.9 1.0 CG A:HIS0 3.1 43.3 1.0 NE2 A:HIS0 3.6 48.1 1.0 CB A:HIS0 3.8 41.7 1.0 CD2 A:HIS0 3.9 42.2 1.0

G.R.Hoffman, N.Nassar, R.A.Cerione. Structure of the Rho Family Gtp-Binding Protein CDC42 in Complex with the Multifunctional Regulator Rhogdi. Cell(Cambridge,Mass.) V. 100 345 2000.
ISSN: ISSN 0092-8674
PubMed: 10676816
DOI: 10.1016/S0092-8674(00)80670-4