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Magnesium in PDB 1dv6: Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+
Protein crystallography data
The structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+, PDB code: 1dv6
was solved by
H.L.Axelrod,
E.C.Abresch,
M.L.Paddock,
M.Y.Okamura,
G.Feher,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 27.52 / 2.50 |
| Space group | P 43 21 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 141.517, 141.517, 278.506, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 23.8 / 26.5 |
Other elements in 1dv6:
The structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+ also contains other interesting chemical elements:
| Iron | (Fe) | 2 atoms |
| Chlorine | (Cl) | 2 atoms |
| Zinc | (Zn) | 2 atoms |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+
(pdb code 1dv6). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+, PDB code: 1dv6:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
In total 8 binding sites of Magnesium where determined in the Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+, PDB code: 1dv6:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
Magnesium binding site 1 out of 8 in 1dv6
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Magnesium Binding Sites List in 1dv6
Magnesium binding site 1 out
of 8 in the Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+ within 5.0Å range:
|
Magnesium binding site 2 out of 8 in 1dv6
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Magnesium Binding Sites List in 1dv6
Magnesium binding site 2 out
of 8 in the Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+ within 5.0Å range:
|
Magnesium binding site 3 out of 8 in 1dv6
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Magnesium Binding Sites List in 1dv6
Magnesium binding site 3 out
of 8 in the Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+ within 5.0Å range:
|
Magnesium binding site 4 out of 8 in 1dv6
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Magnesium Binding Sites List in 1dv6
Magnesium binding site 4 out
of 8 in the Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+ within 5.0Å range:
|
Magnesium binding site 5 out of 8 in 1dv6
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Magnesium Binding Sites List in 1dv6
Magnesium binding site 5 out
of 8 in the Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+ within 5.0Å range:
|
Magnesium binding site 6 out of 8 in 1dv6
Go back to
Magnesium Binding Sites List in 1dv6
Magnesium binding site 6 out
of 8 in the Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+ within 5.0Å range:
|
Magnesium binding site 7 out of 8 in 1dv6
Go back to
Magnesium Binding Sites List in 1dv6
Magnesium binding site 7 out
of 8 in the Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+ within 5.0Å range:
|
Magnesium binding site 8 out of 8 in 1dv6
Go back to
Magnesium Binding Sites List in 1dv6
Magnesium binding site 8 out
of 8 in the Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Charge-Neutral Dqaqb State with the Proton Transfer Inhibitor ZN2+ within 5.0Å range:
|
Reference:
H.L.Axelrod,
E.C.Abresch,
M.L.Paddock,
M.Y.Okamura,
G.Feher.
Determination of the Binding Sites of the Proton Transfer Inhibitors CD2+ and ZN2+ in Bacterial Reaction Centers. Proc.Natl.Acad.Sci.Usa V. 97 1542 2000.
ISSN: ISSN 0027-8424
PubMed: 10677497
DOI: 10.1073/PNAS.97.4.1542
Page generated: Mon Dec 14 05:50:56 2020
ISSN: ISSN 0027-8424
PubMed: 10677497
DOI: 10.1073/PNAS.97.4.1542
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