Atomistry » Magnesium » PDB 1duh-1e9a » 1e3m
Atomistry »
  Magnesium »
    PDB 1duh-1e9a »
      1e3m »

Magnesium in PDB 1e3m: The Crystal Structure of E. Coli Muts Binding to Dna with A G:T Mismatch

Protein crystallography data

The structure of The Crystal Structure of E. Coli Muts Binding to Dna with A G:T Mismatch, PDB code: 1e3m was solved by M.H.Lamers, A.Perrakis, J.H.Enzlin, H.H.K.Winterwerp, N.De Wind, T.K.Sixma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 89.960, 92.370, 261.330, 90.00, 90.00, 90.00
R / Rfree (%) 22.8 / 26.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Crystal Structure of E. Coli Muts Binding to Dna with A G:T Mismatch (pdb code 1e3m). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Crystal Structure of E. Coli Muts Binding to Dna with A G:T Mismatch, PDB code: 1e3m:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 1e3m

Go back to Magnesium Binding Sites List in 1e3m
Magnesium binding site 1 out of 2 in the The Crystal Structure of E. Coli Muts Binding to Dna with A G:T Mismatch


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of E. Coli Muts Binding to Dna with A G:T Mismatch within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1001

b:40.3
occ:1.00
O A:HOH2228 2.0 38.1 1.0
O A:HOH2200 2.1 42.5 1.0
O A:HOH2188 2.1 39.0 1.0
O2B A:ADP1801 2.1 41.4 1.0
O A:HOH2227 2.1 41.2 1.0
OG A:SER621 2.1 37.9 1.0
CB A:SER621 2.8 38.9 1.0
PB A:ADP1801 3.3 41.9 1.0
O1B A:ADP1801 3.4 40.6 1.0
OD2 A:ASP693 3.7 42.2 1.0
N A:SER621 3.8 40.4 1.0
O1A A:ADP1801 3.8 43.2 1.0
CA A:SER621 3.8 39.5 1.0
OD1 A:ASP693 4.1 43.7 1.0
O3A A:ADP1801 4.3 40.7 1.0
PA A:ADP1801 4.4 44.3 1.0
CG A:ASP693 4.4 42.4 1.0
O3B A:ADP1801 4.4 41.4 1.0
O2A A:ADP1801 4.5 46.1 1.0
OE2 A:GLU694 4.5 44.3 1.0
C A:LYS620 4.9 41.0 1.0

Magnesium binding site 2 out of 2 in 1e3m

Go back to Magnesium Binding Sites List in 1e3m
Magnesium binding site 2 out of 2 in the The Crystal Structure of E. Coli Muts Binding to Dna with A G:T Mismatch


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of E. Coli Muts Binding to Dna with A G:T Mismatch within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1011

b:57.7
occ:1.00
O A:HOH2034 2.1 59.0 1.0
O A:HOH2036 2.1 57.5 1.0
O A:HOH2035 2.1 58.6 1.0
O A:HOH2037 2.1 58.2 1.0
O A:SER102 2.1 57.6 1.0
O A:PRO99 2.7 57.4 1.0
C A:SER102 3.3 57.5 1.0
C A:PRO99 3.7 57.3 1.0
O A:LYS103 3.7 55.7 1.0
CA A:SER102 4.0 57.8 1.0
CB A:SER102 4.0 57.8 1.0
O A:GLY104 4.1 49.7 1.0
N A:SER102 4.1 58.1 1.0
CA A:PRO99 4.2 56.9 1.0
C A:LYS103 4.3 55.6 1.0
N A:LYS103 4.4 57.3 1.0
CB A:PRO99 4.6 57.1 1.0
OP2 E:DC11 4.7 40.8 1.0
CA A:LYS103 4.7 56.9 1.0
N A:ALA100 4.8 57.6 1.0
C A:GLY104 5.0 50.1 1.0

Reference:

M.H.Lamers, A.Perrakis, J.H.Enzlin, H.H.K.Winterwerp, N.De Wind, T.K.Sixma. The Crystal Structure of Dna Mismatch Repair Protein Muts Binding to A G X T Mismatch Nature V. 407 711 2000.
ISSN: ISSN 0028-0836
PubMed: 11048711
DOI: 10.1038/35037523
Page generated: Tue Aug 13 02:51:27 2024

Last articles

Na in 5M6M
Na in 5M6L
Na in 5M6H
Na in 5M5K
Na in 5M65
Na in 5M6F
Na in 5M6E
Na in 5M60
Na in 5M5A
Na in 5M4L
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy