Atomistry » Magnesium » PDB 1e9b-1enn » 1edr
Atomistry »
  Magnesium »
    PDB 1e9b-1enn »
      1edr »

Magnesium in PDB 1edr: Molecular and Crystal Structure of D(CGCGMO6AATTCGCG) at 1.6 Angstrom

Protein crystallography data

The structure of Molecular and Crystal Structure of D(CGCGMO6AATTCGCG) at 1.6 Angstrom, PDB code: 1edr was solved by T.Chatake, T.Hikima, A.Ono, Y.Ueno, A.Matsuda, A.Takenaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 5.00 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 25.500, 39.800, 66.500, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 27

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Molecular and Crystal Structure of D(CGCGMO6AATTCGCG) at 1.6 Angstrom (pdb code 1edr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Molecular and Crystal Structure of D(CGCGMO6AATTCGCG) at 1.6 Angstrom, PDB code: 1edr:

Magnesium binding site 1 out of 1 in 1edr

Go back to Magnesium Binding Sites List in 1edr
Magnesium binding site 1 out of 1 in the Molecular and Crystal Structure of D(CGCGMO6AATTCGCG) at 1.6 Angstrom


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Molecular and Crystal Structure of D(CGCGMO6AATTCGCG) at 1.6 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg26

b:13.8
occ:1.00
O B:HOH151 2.0 14.1 1.0
O A:HOH150 2.0 13.9 1.0
O A:HOH152 2.0 13.9 1.0
O A:HOH147 2.1 14.2 1.0
O A:HOH148 2.1 14.3 1.0
O B:HOH149 2.1 14.1 1.0
O B:HOH36 4.0 21.2 1.0
O A:HOH53 4.1 26.4 1.0
O A:HOH44 4.2 21.1 1.0
O6 B:DG22 4.4 14.6 1.0
O B:HOH127 4.4 31.0 1.0
O B:HOH51 4.4 15.8 1.0
C5 A:DC1 4.4 15.6 1.0
O6 A:DG2 4.4 12.6 1.0
N7 A:DG2 4.5 13.6 1.0
C6 A:DC1 4.8 15.8 1.0

Reference:

T.Chatake, T.Hikima, A.Ono, Y.Ueno, A.Matsuda, A.Takenaka. Crystallographic Studies on Damaged Dnas. II. N(6)-Methoxyadenine Can Present Two Alternate Faces For Watson-Crick Base-Pairing, Leading to Pyrimidine Transition Mutagenesis. J.Mol.Biol. V. 294 1223 1999.
ISSN: ISSN 0022-2836
PubMed: 10600380
DOI: 10.1006/JMBI.1999.3304
Page generated: Tue Aug 13 02:56:27 2024

Last articles

Cl in 3KIA
Cl in 3KJQ
Cl in 3KI0
Cl in 3KJ1
Cl in 3KHI
Cl in 3KHF
Cl in 3KER
Cl in 3KH2
Cl in 3KGX
Cl in 3KGY
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy