Atomistry » Magnesium » PDB 1e9a-1en9 » 1edr
Atomistry »
  Magnesium »
    PDB 1e9a-1en9 »
      1edr »

Magnesium in PDB 1edr: Molecular and Crystal Structure of D(CGCGMO6AATTCGCG) at 1.6 Angstrom

Protein crystallography data

The structure of Molecular and Crystal Structure of D(CGCGMO6AATTCGCG) at 1.6 Angstrom, PDB code: 1edr was solved by T.Chatake, T.Hikima, A.Ono, Y.Ueno, A.Matsuda, A.Takenaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 5.00 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 25.500, 39.800, 66.500, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 27

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Molecular and Crystal Structure of D(CGCGMO6AATTCGCG) at 1.6 Angstrom (pdb code 1edr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Molecular and Crystal Structure of D(CGCGMO6AATTCGCG) at 1.6 Angstrom, PDB code: 1edr:

Magnesium binding site 1 out of 1 in 1edr

Go back to Magnesium Binding Sites List in 1edr
Magnesium binding site 1 out of 1 in the Molecular and Crystal Structure of D(CGCGMO6AATTCGCG) at 1.6 Angstrom


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Molecular and Crystal Structure of D(CGCGMO6AATTCGCG) at 1.6 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg26

b:13.8
occ:1.00
O B:HOH151 2.0 14.1 1.0
O A:HOH150 2.0 13.9 1.0
O A:HOH152 2.0 13.9 1.0
O A:HOH147 2.1 14.2 1.0
O A:HOH148 2.1 14.3 1.0
O B:HOH149 2.1 14.1 1.0
O B:HOH36 4.0 21.2 1.0
O A:HOH53 4.1 26.4 1.0
O A:HOH44 4.2 21.1 1.0
O6 B:DG22 4.4 14.6 1.0
O B:HOH127 4.4 31.0 1.0
O B:HOH51 4.4 15.8 1.0
C5 A:DC1 4.4 15.6 1.0
O6 A:DG2 4.4 12.6 1.0
N7 A:DG2 4.5 13.6 1.0
C6 A:DC1 4.8 15.8 1.0

Reference:

T.Chatake, T.Hikima, A.Ono, Y.Ueno, A.Matsuda, A.Takenaka. Crystallographic Studies on Damaged Dnas. II. N(6)-Methoxyadenine Can Present Two Alternate Faces For Watson-Crick Base-Pairing, Leading to Pyrimidine Transition Mutagenesis. J.Mol.Biol. V. 294 1223 1999.
ISSN: ISSN 0022-2836
PubMed: 10600380
DOI: 10.1006/JMBI.1999.3304
Page generated: Mon Dec 14 05:51:55 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy