Atomistry » Magnesium » PDB 1eo3-1f6t » 1eo3
Atomistry »
  Magnesium »
    PDB 1eo3-1f6t »
      1eo3 »

Magnesium in PDB 1eo3: Inhibition of Ecorv Endonuclease By Deoxyribo-3'-S-Phosphorothiolates: A High Resolution X-Ray Crystallographic Study

Enzymatic activity of Inhibition of Ecorv Endonuclease By Deoxyribo-3'-S-Phosphorothiolates: A High Resolution X-Ray Crystallographic Study

All present enzymatic activity of Inhibition of Ecorv Endonuclease By Deoxyribo-3'-S-Phosphorothiolates: A High Resolution X-Ray Crystallographic Study:
3.1.21.4;

Protein crystallography data

The structure of Inhibition of Ecorv Endonuclease By Deoxyribo-3'-S-Phosphorothiolates: A High Resolution X-Ray Crystallographic Study, PDB code: 1eo3 was solved by N.C.Horton, B.A.Connolly, J.J.Perona, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 4.90 / 2.00
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 48.000, 48.500, 63.800, 97.00, 108.90, 106.30
R / Rfree (%) 19.6 / 29

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Inhibition of Ecorv Endonuclease By Deoxyribo-3'-S-Phosphorothiolates: A High Resolution X-Ray Crystallographic Study (pdb code 1eo3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Inhibition of Ecorv Endonuclease By Deoxyribo-3'-S-Phosphorothiolates: A High Resolution X-Ray Crystallographic Study, PDB code: 1eo3:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 1eo3

Go back to Magnesium Binding Sites List in 1eo3
Magnesium binding site 1 out of 4 in the Inhibition of Ecorv Endonuclease By Deoxyribo-3'-S-Phosphorothiolates: A High Resolution X-Ray Crystallographic Study


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Inhibition of Ecorv Endonuclease By Deoxyribo-3'-S-Phosphorothiolates: A High Resolution X-Ray Crystallographic Study within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:33.0
occ:1.00
 OE2 A:GLU45 2.0 29.9 1.0
O A:HOH708 2.0 31.3 1.0
O A:HOH610 2.1 23.3 1.0
O A:HOH666 2.2 30.4 1.0
OD1 A:ASP74 2.4 27.4 1.0
CD A:GLU45 2.9 33.4 1.0
OE1 A:GLU45 3.1 36.1 1.0
CG A:ASP74 3.3 24.5 1.0
CB A:ASP74 3.6 23.9 1.0
CA A:ASP74 3.8 23.9 1.0
O A:HOH609 4.2 61.6 1.0
O A:HOH665 4.2 43.2 1.0
OE2 A:GLU65 4.2 29.5 1.0
CG A:GLU45 4.3 30.8 1.0
OD2 A:ASP74 4.3 23.4 1.0
O A:ASP74 4.4 22.1 1.0
O A:HOH611 4.5 44.4 1.0
C A:ASP74 4.6 23.7 1.0
CD A:PRO66 4.7 29.0 1.0
N A:ASP74 4.9 22.9 1.0
O A:HOH714 5.0 38.8 1.0

Magnesium binding site 2 out of 4 in 1eo3

Go back to Magnesium Binding Sites List in 1eo3
Magnesium binding site 2 out of 4 in the Inhibition of Ecorv Endonuclease By Deoxyribo-3'-S-Phosphorothiolates: A High Resolution X-Ray Crystallographic Study


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Inhibition of Ecorv Endonuclease By Deoxyribo-3'-S-Phosphorothiolates: A High Resolution X-Ray Crystallographic Study within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:71.2
occ:1.00
 O A:HOH611 2.2 44.4 1.0
OD2 A:ASP74 2.2 23.4 1.0
O C:HOH27 2.3 27.8 1.0
O A:ILE91 2.6 22.1 1.0
CG A:ASP74 3.0 24.5 1.0
OD1 A:ASP74 3.2 27.4 1.0
C A:ILE91 3.7 22.7 1.0
OD1 A:ASP90 3.8 35.8 1.0
O C:HOH28 3.9 22.1 1.0
N A:ILE91 3.9 28.3 1.0
OD2 A:ASP90 3.9 30.4 1.0
CG A:ASP90 4.0 30.2 1.0
CA A:ILE91 4.2 25.7 1.0
O A:HOH727 4.2 50.2 1.0
OP2 C:DA7 4.2 33.8 1.0
O C:HOH33 4.2 28.1 1.0
C5' C:DA7 4.3 27.4 1.0
CB A:ILE91 4.4 28.4 1.0
CB A:ASP74 4.5 23.9 1.0
C4' C:DA7 4.5 27.7 1.0
O A:HOH666 4.5 30.4 1.0
C3' C:DA7 4.6 28.0 1.0
O3' C:DA7 4.6 29.5 1.0
OE1 A:GLU45 4.6 36.1 1.0
C A:ASP90 4.9 29.3 1.0
N A:LYS92 4.9 22.6 1.0
O A:HOH665 4.9 43.2 1.0
CD A:LYS92 5.0 33.5 1.0

Magnesium binding site 3 out of 4 in 1eo3

Go back to Magnesium Binding Sites List in 1eo3
Magnesium binding site 3 out of 4 in the Inhibition of Ecorv Endonuclease By Deoxyribo-3'-S-Phosphorothiolates: A High Resolution X-Ray Crystallographic Study


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Inhibition of Ecorv Endonuclease By Deoxyribo-3'-S-Phosphorothiolates: A High Resolution X-Ray Crystallographic Study within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg503

b:29.3
occ:1.00
 O B:HOH619 1.9 27.9 1.0
OE1 B:GLU45 2.0 36.5 1.0
O B:HOH622 2.0 38.8 1.0
OD1 B:ASP74 2.1 26.6 1.0
O B:HOH668 2.1 23.9 1.0
O B:HOH618 2.2 18.9 1.0
CD B:GLU45 3.0 38.0 1.0
CG B:ASP74 3.1 27.1 1.0
OE2 B:GLU45 3.3 39.9 1.0
CB B:ASP74 3.6 22.2 1.0
CA B:ASP74 3.8 23.9 1.0
O B:HOH686 4.0 49.4 1.0
OD2 B:ASP74 4.1 26.3 1.0
O B:HOH623 4.1 28.9 1.0
O B:HOH621 4.2 28.3 1.0
O B:HOH697 4.3 62.1 1.0
CG B:GLU45 4.3 33.0 1.0
O B:HOH669 4.4 42.9 1.0
OE2 B:GLU65 4.4 37.4 1.0
O B:ASP74 4.5 24.0 1.0
O B:HOH620 4.5 60.6 1.0
C B:ASP74 4.6 22.9 1.0
CD B:PRO66 4.8 29.2 1.0
N B:ASP74 4.9 21.8 1.0
O B:HOH705 5.0 34.6 1.0

Magnesium binding site 4 out of 4 in 1eo3

Go back to Magnesium Binding Sites List in 1eo3
Magnesium binding site 4 out of 4 in the Inhibition of Ecorv Endonuclease By Deoxyribo-3'-S-Phosphorothiolates: A High Resolution X-Ray Crystallographic Study


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Inhibition of Ecorv Endonuclease By Deoxyribo-3'-S-Phosphorothiolates: A High Resolution X-Ray Crystallographic Study within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg504

b:44.9
occ:1.00
 O B:HOH699 2.1 59.5 1.0
O B:HOH623 2.1 28.9 1.0
O B:HOH625 2.1 33.0 1.0
OD2 B:ASP74 2.2 26.3 1.0
O B:ILE91 2.2 18.6 1.0
CG B:ASP74 3.2 27.1 1.0
C B:ILE91 3.3 18.1 1.0
OD1 B:ASP74 3.5 26.6 1.0
N B:ILE91 3.5 20.1 1.0
CA B:ILE91 3.7 19.8 1.0
O D:HOH89 3.8 32.4 1.0
OD1 B:ASP90 3.9 25.5 1.0
CB B:ILE91 4.0 17.6 1.0
OE2 B:GLU45 4.0 39.9 1.0
O B:HOH697 4.1 62.1 1.0
CG B:ASP90 4.2 27.5 1.0
OD2 B:ASP90 4.3 31.1 1.0
O3' D:DA7 4.3 36.7 1.0
C5' D:DA7 4.4 28.3 1.0
OP2 D:DA7 4.4 31.5 1.0
N B:LYS92 4.4 20.7 1.0
C B:ASP90 4.5 19.9 1.0
CB B:ASP74 4.5 22.2 1.0
O B:HOH622 4.6 38.8 1.0
CD B:LYS92 4.6 25.9 1.0
C4' D:DA7 4.8 29.4 1.0
CD B:GLU45 4.9 38.0 1.0
CG1 B:ILE91 4.9 16.8 1.0
CA B:LYS92 4.9 22.4 1.0
CA B:ASP90 5.0 23.2 1.0

Reference:

N.C.Horton, B.A.Connolly, J.J.Perona. Inhibition of Ecorv Endonuclease By Deoxyribo-3'-S-Phosphorothiolates: A High-Resolution X-Ray Crystallographic Study J.Am.Chem.Soc. V. 122 3314 2000.
ISSN: ISSN 0002-7863
DOI: 10.1021/JA993719J
Page generated: Tue Aug 13 03:01:49 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy