Atomistry » Magnesium » PDB 1eo3-1f6t » 1esn
Atomistry »
  Magnesium »
    PDB 1eo3-1f6t »
      1esn »

Magnesium in PDB 1esn: Structural Basis For the Feedback Regulation of Escherichia Coli Pantothenate Kinase By Coenzyme A

Enzymatic activity of Structural Basis For the Feedback Regulation of Escherichia Coli Pantothenate Kinase By Coenzyme A

All present enzymatic activity of Structural Basis For the Feedback Regulation of Escherichia Coli Pantothenate Kinase By Coenzyme A:
2.7.1.33;

Protein crystallography data

The structure of Structural Basis For the Feedback Regulation of Escherichia Coli Pantothenate Kinase By Coenzyme A, PDB code: 1esn was solved by M.Yun, C.G.Park, J.Y.Kim, C.O.Rock, S.Jackowski, H.W.Park, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.60
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 130.080, 130.080, 281.750, 90.00, 90.00, 120.00
R / Rfree (%) 21.6 / 26

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structural Basis For the Feedback Regulation of Escherichia Coli Pantothenate Kinase By Coenzyme A (pdb code 1esn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Structural Basis For the Feedback Regulation of Escherichia Coli Pantothenate Kinase By Coenzyme A, PDB code: 1esn:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 1esn

Go back to Magnesium Binding Sites List in 1esn
Magnesium binding site 1 out of 4 in the Structural Basis For the Feedback Regulation of Escherichia Coli Pantothenate Kinase By Coenzyme A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structural Basis For the Feedback Regulation of Escherichia Coli Pantothenate Kinase By Coenzyme A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:32.5
occ:1.00
OG A:SER102 2.4 29.9 1.0
O2G A:ANP401 2.4 39.1 1.0
O2B A:ANP401 2.5 31.1 1.0
OE2 A:GLU199 2.7 50.4 1.0
CB A:SER102 3.2 35.2 1.0
PG A:ANP401 3.4 41.2 1.0
N3B A:ANP401 3.4 38.6 1.0
PB A:ANP401 3.5 34.0 1.0
CD A:GLU199 3.9 49.3 1.0
O1G A:ANP401 3.9 41.9 1.0
N A:SER102 4.1 34.3 1.0
CA A:SER102 4.2 33.2 1.0
O2A A:ANP401 4.3 38.4 1.0
O1B A:ANP401 4.5 35.1 1.0
OE1 A:GLU199 4.5 41.5 1.0
OD2 A:ASP127 4.6 44.2 1.0
O3A A:ANP401 4.6 34.9 1.0
O3G A:ANP401 4.7 36.0 1.0
CE A:LYS101 4.8 23.8 1.0
PA A:ANP401 4.9 39.1 1.0

Magnesium binding site 2 out of 4 in 1esn

Go back to Magnesium Binding Sites List in 1esn
Magnesium binding site 2 out of 4 in the Structural Basis For the Feedback Regulation of Escherichia Coli Pantothenate Kinase By Coenzyme A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structural Basis For the Feedback Regulation of Escherichia Coli Pantothenate Kinase By Coenzyme A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:27.6
occ:1.00
OG B:SER102 2.2 43.2 1.0
O2G B:ANP402 2.3 44.2 1.0
O2B B:ANP402 2.4 32.2 1.0
OE2 B:GLU199 3.1 52.3 1.0
PG B:ANP402 3.3 32.3 1.0
CB B:SER102 3.3 31.6 1.0
N3B B:ANP402 3.4 32.4 1.0
PB B:ANP402 3.5 38.8 1.0
O1G B:ANP402 3.9 35.9 1.0
CD B:GLU199 4.1 48.9 1.0
O2A B:ANP402 4.2 36.5 1.0
N B:SER102 4.3 29.1 1.0
CA B:SER102 4.3 31.2 1.0
O B:HOH5077 4.3 33.0 1.0
OE1 B:GLU199 4.4 47.8 1.0
O1B B:ANP402 4.5 30.2 1.0
O3A B:ANP402 4.6 31.3 1.0
O3G B:ANP402 4.6 40.7 1.0
OD2 B:ASP127 4.7 39.9 1.0
PA B:ANP402 4.8 35.3 1.0

Magnesium binding site 3 out of 4 in 1esn

Go back to Magnesium Binding Sites List in 1esn
Magnesium binding site 3 out of 4 in the Structural Basis For the Feedback Regulation of Escherichia Coli Pantothenate Kinase By Coenzyme A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structural Basis For the Feedback Regulation of Escherichia Coli Pantothenate Kinase By Coenzyme A within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg503

b:33.2
occ:1.00
OG C:SER102 2.1 35.2 1.0
O2G C:ANP403 2.4 40.6 1.0
O2B C:ANP403 2.5 35.1 1.0
OE2 C:GLU199 3.2 52.8 1.0
PG C:ANP403 3.3 31.8 1.0
O C:HOH5064 3.3 50.5 1.0
CB C:SER102 3.3 36.9 1.0
N3B C:ANP403 3.4 29.3 1.0
PB C:ANP403 3.6 40.4 1.0
O1G C:ANP403 3.8 33.4 1.0
O2A C:ANP403 4.1 30.9 1.0
CD C:GLU199 4.3 45.2 1.0
N C:SER102 4.3 30.3 1.0
CA C:SER102 4.4 34.6 1.0
O3A C:ANP403 4.6 35.8 1.0
O1B C:ANP403 4.6 40.9 1.0
O3G C:ANP403 4.6 38.5 1.0
CE1 C:HIS177 4.7 74.9 1.0
OE1 C:GLU199 4.8 38.9 1.0
OD2 C:ASP127 4.8 48.3 1.0
PA C:ANP403 4.8 40.8 1.0
NE2 C:HIS177 4.9 77.8 1.0

Magnesium binding site 4 out of 4 in 1esn

Go back to Magnesium Binding Sites List in 1esn
Magnesium binding site 4 out of 4 in the Structural Basis For the Feedback Regulation of Escherichia Coli Pantothenate Kinase By Coenzyme A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structural Basis For the Feedback Regulation of Escherichia Coli Pantothenate Kinase By Coenzyme A within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg504

b:30.7
occ:1.00
OG D:SER102 2.3 35.9 1.0
O2G D:ANP404 2.4 42.3 1.0
O2B D:ANP404 2.5 33.6 1.0
OE2 D:GLU199 3.0 44.6 1.0
O D:HOH5306 3.3 57.0 1.0
PG D:ANP404 3.4 39.6 1.0
CB D:SER102 3.4 34.5 1.0
N3B D:ANP404 3.4 42.2 1.0
PB D:ANP404 3.6 39.3 1.0
O1G D:ANP404 3.9 43.6 1.0
CD D:GLU199 4.2 41.0 1.0
N D:SER102 4.3 33.9 1.0
O2A D:ANP404 4.3 35.1 1.0
CA D:SER102 4.4 32.7 1.0
OD2 D:ASP127 4.4 46.2 1.0
O1B D:ANP404 4.5 40.6 1.0
NE2 D:HIS177 4.6 70.2 1.0
O3A D:ANP404 4.7 32.4 1.0
O3G D:ANP404 4.7 41.6 1.0
OE1 D:GLU199 4.7 34.4 1.0
NZ D:LYS101 4.9 25.7 1.0
PA D:ANP404 4.9 40.6 1.0

Reference:

M.Yun, C.G.Park, J.Y.Kim, C.O.Rock, S.Jackowski, H.W.Park. Structural Basis For the Feedback Regulation of Escherichia Coli Pantothenate Kinase By Coenzyme A. J.Biol.Chem. V. 275 28093 2000.
ISSN: ISSN 0021-9258
PubMed: 10862768
Page generated: Mon Dec 14 05:52:44 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy