Magnesium in PDB 1evv: Crystal Structure of Yeast Phenylalanine Transfer Rna at 2.0 A Resolution

Protein crystallography data

Magnesium Binding Sites:

Magnesium binding site 1 out of 10 in 1evv

Magnesium Binding Sites List in 1evv

Magnesium binding site 1 out of 10 in the Crystal Structure of Yeast Phenylalanine Transfer Rna at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Yeast Phenylalanine Transfer Rna at 2.0 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg901 b:51.4 occ:1.00 O A:HOH985 2.5 33.2 0.9 O A:HOH986 2.6 50.2 1.0 O A:HOH988 2.7 32.1 0.7 O A:HOH987 2.8 49.3 1.0 OP2 A:U12 3.0 47.0 1.0 C5 A:U12 3.9 44.5 1.0 P A:U12 4.3 46.1 1.0 C6 A:U12 4.3 43.1 1.0 OP2 A:U8 4.3 34.6 1.0 O5' A:U12 4.4 52.5 1.0 OP2 A:C11 4.6 43.5 1.0 C5 A:C13 4.6 31.8 1.0 O A:HOH989 4.7 41.1 0.9 OP2 A:A9 4.7 27.3 1.0 C3' A:C11 4.8 46.3 1.0 O5' A:C11 4.8 46.4 1.0 C4 A:U12 4.9 46.0 1.0

Magnesium binding site 2 out of 10 in 1evv

Magnesium Binding Sites List in 1evv

Magnesium binding site 2 out of 10 in the Crystal Structure of Yeast Phenylalanine Transfer Rna at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Yeast Phenylalanine Transfer Rna at 2.0 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg902 b:48.7 occ:0.94 OP1 A:G20 1.9 37.9 1.0 O A:HOH1105 1.9 48.1 1.0 OP2 A:A21 2.0 32.4 1.0 O A:HOH1114 2.2 38.0 0.8 P A:G20 3.1 34.1 1.0 P A:A21 3.4 35.5 1.0 OP2 A:G20 3.6 31.1 1.0 O5' A:G20 3.7 35.0 1.0 O A:HOH1123 3.9 71.1 1.0 C5' A:G20 4.1 31.7 1.0 OP1 A:A21 4.1 39.1 1.0 O3' A:G20 4.3 33.5 1.0 O3' A:G19 4.4 31.5 1.0 O A:HOH1122 4.5 59.1 1.0 O5' A:A21 4.6 37.9 1.0 C3' A:G20 4.6 34.0 1.0 C5' A:A21 4.7 33.0 1.0 C4' A:G20 4.9 33.1 1.0

Magnesium binding site 3 out of 10 in 1evv

Magnesium Binding Sites List in 1evv

Magnesium binding site 3 out of 10 in the Crystal Structure of Yeast Phenylalanine Transfer Rna at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Yeast Phenylalanine Transfer Rna at 2.0 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg903 b:29.6 occ:1.00 O A:HOH918 1.8 38.3 1.0 O A:HOH922 1.9 31.7 0.9 OP1 A:G19 2.0 32.3 1.0 O A:HOH920 2.1 26.2 0.8 O A:HOH921 2.1 34.2 0.9 O A:HOH919 2.2 31.7 1.0 P A:G19 3.3 30.8 1.0 OP2 A:G19 3.7 37.4 1.0 O5' A:G19 3.9 29.5 1.0 O4 A:U59 3.9 36.2 1.0 N4 A:C60 4.0 37.8 1.0 C5' A:G19 4.2 34.5 1.0 N7 A:G20 4.2 25.4 1.0 O6 A:G20 4.3 27.2 1.0 N3 A:C60 4.3 33.9 1.0 O A:HOH1021 4.3 35.4 0.9 O3' A:G18 4.6 31.9 1.0 C4 A:C60 4.7 35.6 1.0 C4 A:U59 4.9 36.6 1.0

Magnesium binding site 4 out of 10 in 1evv

Magnesium Binding Sites List in 1evv

Magnesium binding site 4 out of 10 in the Crystal Structure of Yeast Phenylalanine Transfer Rna at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Yeast Phenylalanine Transfer Rna at 2.0 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg904 b:44.5 occ:1.00 O A:HOH938 1.8 50.6 1.0 O A:HOH937 1.9 36.8 1.0 O A:HOH939 2.0 38.3 0.9 O A:HOH941 2.0 57.0 1.0 O A:HOH940 2.1 40.7 1.0 O A:HOH936 2.1 50.8 1.0 O A:HOH974 3.7 45.7 0.9 O A:HOH929 4.1 48.0 1.0 O4 A:U41 4.2 51.9 1.0 OP2 A:C25 4.3 48.2 1.0 O6 A:G42 4.4 47.7 1.0 N7 A:G42 4.4 41.1 1.0 C4 A:U41 4.8 49.0 1.0 C5 A:U41 5.0 43.2 1.0

Magnesium binding site 5 out of 10 in 1evv

Magnesium Binding Sites List in 1evv

Magnesium binding site 5 out of 10 in the Crystal Structure of Yeast Phenylalanine Transfer Rna at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of Yeast Phenylalanine Transfer Rna at 2.0 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg905 b:60.7 occ:0.84 OP1 A:C11 2.0 39.6 1.0 P A:C11 2.3 43.2 1.0 OP2 A:C11 2.3 43.5 1.0 O3' A:2MG10 2.9 41.8 1.0 O A:HOH977 3.0 44.6 1.0 O A:HOH1034 3.1 70.6 1.0 O5' A:C11 3.8 46.4 1.0 C3' A:2MG10 3.9 40.0 1.0 O A:HOH1045 3.9 67.5 1.0 C5' A:2MG10 4.2 39.6 1.0 C4' A:2MG10 4.4 37.1 1.0 O A:HOH987 4.5 49.3 1.0 O A:HOH985 4.6 33.2 0.9 C5' A:C11 4.6 48.1 1.0 O5' A:2MG10 4.8 30.1 1.0

Magnesium binding site 6 out of 10 in 1evv

Magnesium Binding Sites List in 1evv

Magnesium binding site 6 out of 10 in the Crystal Structure of Yeast Phenylalanine Transfer Rna at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of Yeast Phenylalanine Transfer Rna at 2.0 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg906 b:89.4 occ:1.00 OP1 A:A36 1.8 0.9 1.0 P A:A36 2.8 0.1 1.0 O3' A:A35 2.8 0.4 1.0 OP2 A:A36 3.8 0.1 1.0 O5' A:A36 3.9 0.2 1.0 C5' A:A36 4.0 1.0 1.0 C3' A:A35 4.2 97.0 1.0 O5' A:A35 4.4 99.0 1.0 C4' A:A35 4.6 96.8 1.0 O A:HOH932 4.8 55.1 0.8 O2' A:A35 4.9 95.4 1.0

Magnesium binding site 7 out of 10 in 1evv

Magnesium Binding Sites List in 1evv

Magnesium binding site 7 out of 10 in the Crystal Structure of Yeast Phenylalanine Transfer Rna at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of Yeast Phenylalanine Transfer Rna at 2.0 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg907 b:32.5 occ:0.32 O A:HOH971 2.1 55.4 1.0 OP2 A:G43 2.2 49.0 1.0 P A:G43 3.5 52.5 1.0 O5' A:G42 4.0 52.9 1.0 O A:HOH1075 4.1 61.1 0.9 O A:HOH1033 4.1 50.2 1.0 O A:HOH1032 4.1 66.4 1.0 C3' A:G42 4.1 49.7 1.0 O3' A:G42 4.2 53.9 1.0 OP1 A:G43 4.2 55.4 1.0 O5' A:G43 4.6 53.5 1.0 OP1 A:G42 4.7 62.2 1.0 P A:G42 4.7 58.3 1.0 OP2 A:G42 4.7 56.8 1.0 C5' A:G42 4.7 44.5 1.0

Magnesium binding site 8 out of 10 in 1evv

Magnesium Binding Sites List in 1evv

Magnesium binding site 8 out of 10 in the Crystal Structure of Yeast Phenylalanine Transfer Rna at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Structure of Yeast Phenylalanine Transfer Rna at 2.0 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg908 b:69.3 occ:0.66 O3' A:G71 2.0 68.2 1.0 P A:C72 2.2 69.8 1.0 OP2 A:C72 2.3 72.6 1.0 OP1 A:C72 2.5 73.8 1.0 C3' A:G71 3.1 64.3 1.0 O5' A:C72 3.7 70.3 1.0 C4' A:G71 3.7 60.4 1.0 C5' A:G71 3.8 57.1 1.0 C2' A:G71 4.3 63.7 1.0 O5' A:G71 4.3 53.5 1.0 O A:HOH1103 4.4 66.9 1.0 C5' A:C72 4.6 69.3 1.0 O2' A:G71 4.7 65.0 1.0

Magnesium binding site 9 out of 10 in 1evv

Magnesium Binding Sites List in 1evv

Magnesium binding site 9 out of 10 in the Crystal Structure of Yeast Phenylalanine Transfer Rna at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Crystal Structure of Yeast Phenylalanine Transfer Rna at 2.0 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg909 b:63.7 occ:0.53 O A:HOH1062 2.1 81.9 1.0 O A:HOH1043 2.1 56.2 0.8 OP1 A:U52 2.2 42.9 1.0 P A:U52 3.5 45.2 1.0 O5' A:U52 3.9 39.9 1.0 C5' A:U52 4.1 44.3 1.0 OP2 A:U52 4.2 41.3 1.0 O A:HOH1044 4.3 44.2 0.6 O3' A:G51 4.7 43.6 1.0 OP2 A:G53 5.0 36.6 1.0

Magnesium binding site 10 out of 10 in 1evv

Magnesium Binding Sites List in 1evv

Magnesium binding site 10 out of 10 in the Crystal Structure of Yeast Phenylalanine Transfer Rna at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Crystal Structure of Yeast Phenylalanine Transfer Rna at 2.0 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg910 b:0.7 occ:0.77 OP1 A:G30 1.8 69.7 1.0 P A:G30 3.1 68.3 1.0 O3' A:A29 3.6 66.4 1.0 OP2 A:G30 3.7 59.5 1.0 O5' A:G30 4.3 65.9 1.0 C5' A:G30 4.8 65.0 1.0 C3' A:A29 4.9 64.6 1.0

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