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Magnesium in PDB 1ezw: Structure of Coenzyme F420 Dependent Tetrahydromethanopterin Reductase From Methanopyrus Kandleri

Protein crystallography data

The structure of Structure of Coenzyme F420 Dependent Tetrahydromethanopterin Reductase From Methanopyrus Kandleri, PDB code: 1ezw was solved by S.Shima, E.Warkentin, W.Grabarse, R.K.Thauer, U.Ermler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.65
Space group F 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 90.200, 144.100, 152.100, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 21.2

Other elements in 1ezw:

The structure of Structure of Coenzyme F420 Dependent Tetrahydromethanopterin Reductase From Methanopyrus Kandleri also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Coenzyme F420 Dependent Tetrahydromethanopterin Reductase From Methanopyrus Kandleri (pdb code 1ezw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Coenzyme F420 Dependent Tetrahydromethanopterin Reductase From Methanopyrus Kandleri, PDB code: 1ezw:

Magnesium binding site 1 out of 1 in 1ezw

Go back to Magnesium Binding Sites List in 1ezw
Magnesium binding site 1 out of 1 in the Structure of Coenzyme F420 Dependent Tetrahydromethanopterin Reductase From Methanopyrus Kandleri


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Coenzyme F420 Dependent Tetrahydromethanopterin Reductase From Methanopyrus Kandleri within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg361

b:24.4
occ:0.50
O A:THR56 2.3 15.1 1.0
O A:HOH562 2.4 21.4 1.0
OG A:SER57 2.7 18.2 1.0
C A:THR56 3.3 15.1 1.0
O A:ALA53 3.6 16.7 1.0
CA A:SER57 3.7 15.5 1.0
CB A:SER57 3.8 19.1 1.0
O A:HOH516 3.8 22.8 1.0
N A:SER57 3.9 15.3 1.0
NH1 A:ARG90 3.9 14.4 1.0
O A:VAL54 4.2 17.7 1.0
N A:THR56 4.4 15.9 1.0
CA A:THR56 4.5 14.4 1.0
C A:VAL54 4.6 16.6 1.0
C A:ALA53 4.8 17.3 1.0
CZ A:ARG90 4.9 14.2 1.0
C A:SER57 4.9 15.9 1.0

Reference:

S.Shima, E.Warkentin, W.Grabarse, M.Sordel, M.Wicke, R.K.Thauer, U.Ermler. Structure of Coenzyme F(420) Dependent Methylenetetrahydromethanopterin Reductase From Two Methanogenic Archaea. J.Mol.Biol. V. 300 935 2000.
ISSN: ISSN 0022-2836
PubMed: 10891279
DOI: 10.1006/JMBI.2000.3909
Page generated: Tue Aug 13 03:05:15 2024

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