Magnesium in PDB 1f4v: Crystal Structure of Activated Chey Bound to the N-Terminus of Flim

The structure of Crystal Structure of Activated Chey Bound to the N-Terminus of Flim, PDB code: 1f4v was solved by S.Y.Lee, H.S.Cho, J.G.Pelton, D.Yan, R.K.Henderson, D.King, L.S.Huang, S.Kustu, E.A.Berry, D.E.Wemmer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.22
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	54.232, 54.233, 347.433, 90.00, 90.00, 120.00
R / Rfree (%)	21.7 / 25.8

The structure of Crystal Structure of Activated Chey Bound to the N-Terminus of Flim also contains other interesting chemical elements:

Fluorine

(F)

9 atoms

The binding sites of Magnesium atom in the Crystal Structure of Activated Chey Bound to the N-Terminus of Flim (pdb code 1f4v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Activated Chey Bound to the N-Terminus of Flim, PDB code: 1f4v:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of Activated Chey Bound to the N-Terminus of Flim


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Activated Chey Bound to the N-Terminus of Flim within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:42.5 occ:1.00 OD1 B:ASP13 2.1 29.9 1.0 O B:HOH324 2.2 34.9 1.0 O B:HOH331 2.2 32.2 1.0 OD2 B:ASP57 2.2 30.8 1.0 F1 B:BEF130 2.3 30.8 1.0 O B:ASN59 2.5 32.3 1.0 CG B:ASP13 3.0 34.8 1.0 OD2 B:ASP13 3.3 30.7 1.0 CG B:ASP57 3.3 33.8 1.0 BE B:BEF130 3.5 35.5 1.0 C B:ASN59 3.7 33.3 1.0 OD1 B:ASP12 3.7 29.0 1.0 OD1 B:ASP57 3.7 23.3 1.0 OD1 B:ASN59 4.0 34.0 1.0 F3 B:BEF130 4.2 31.9 1.0 N B:ASP13 4.3 23.7 1.0 CB B:ASP13 4.4 23.2 1.0 CB B:ASN59 4.4 28.2 1.0 CA B:ASN59 4.5 29.7 1.0 CG B:ASP12 4.5 35.4 1.0 CG B:MET60 4.5 39.5 1.0 CB B:ASP57 4.5 38.4 1.0 F2 B:BEF130 4.6 33.6 1.0 N B:PHE14 4.6 26.1 1.0 CG B:ASN59 4.6 30.8 1.0 N B:MET60 4.7 37.0 1.0 NZ B:LYS109 4.7 23.8 1.0 OD2 B:ASP12 4.8 28.9 1.0 N B:ASN59 4.8 34.1 1.0 CA B:ASP13 4.8 26.1 1.0 SD A:MET129 4.8 55.4 1.0 CA B:MET60 4.9 36.0 1.0 CB B:PHE14 4.9 23.0 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of Activated Chey Bound to the N-Terminus of Flim


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Activated Chey Bound to the N-Terminus of Flim within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg302 b:32.4 occ:1.00 OD1 A:ASP13 2.2 30.3 1.0 OD2 A:ASP57 2.2 23.9 1.0 O A:HOH428 2.2 38.9 1.0 F1 A:BEF130 2.3 25.3 1.0 O A:ASN59 2.3 28.9 1.0 O A:HOH416 2.3 32.5 1.0 CG A:ASP13 3.0 29.8 1.0 OD2 A:ASP13 3.1 28.1 1.0 CG A:ASP57 3.3 20.7 1.0 C A:ASN59 3.5 31.5 1.0 BE A:BEF130 3.5 28.8 1.0 OD1 A:ASP57 3.8 21.4 1.0 OD1 A:ASP12 4.0 24.0 1.0 CB A:ASN59 4.1 41.0 1.0 CA A:ASN59 4.2 32.0 1.0 O A:HOH379 4.2 41.6 1.0 CD2 A:PHE14 4.3 43.6 1.0 CG A:MET60 4.3 15.2 1.0 F3 A:BEF130 4.3 27.6 1.0 CB A:ASP13 4.4 30.8 1.0 N A:ASP13 4.4 23.5 1.0 CB A:ASP57 4.5 18.9 1.0 N A:ASN59 4.5 27.1 1.0 N A:MET60 4.5 21.2 1.0 F2 A:BEF130 4.6 27.7 1.0 CE2 A:PHE14 4.6 43.0 1.0 O A:HOH383 4.7 40.0 1.0 CG A:ASP12 4.7 27.0 1.0 CA A:MET60 4.7 24.0 1.0 OD2 A:ASP12 4.8 25.1 1.0 NZ A:LYS109 4.9 33.5 1.0 CA A:ASP13 4.9 32.8 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of Activated Chey Bound to the N-Terminus of Flim


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Activated Chey Bound to the N-Terminus of Flim within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg303 b:61.8 occ:1.00 O C:HOH333 2.5 66.7 1.0 OD1 C:ASP13 2.5 49.8 1.0 F1 C:BEF130 2.5 58.6 1.0 OD2 C:ASP13 2.7 66.4 1.0 O C:ASN59 2.8 70.8 1.0 CG C:ASP13 3.0 61.2 1.0 O C:HOH310 3.0 48.1 1.0 OD2 C:ASP57 3.2 53.1 1.0 CE2 C:PHE14 3.7 0.5 1.0 CZ C:PHE14 3.8 0.4 1.0 C C:ASN59 3.9 68.2 1.0 OD2 C:ASP12 3.9 86.8 1.0 BE C:BEF130 3.9 61.9 1.0 CD2 C:PHE14 4.0 99.0 1.0 CB C:ASN59 4.0 67.2 1.0 CE1 C:PHE14 4.1 0.7 1.0 CG C:ASP57 4.3 57.8 1.0 CG C:PHE14 4.3 97.8 1.0 F3 C:BEF130 4.4 70.8 1.0 CD1 C:PHE14 4.4 0.1 1.0 CB C:ASP13 4.5 65.4 1.0 CA C:ASN59 4.5 68.9 1.0 OD1 C:ASP57 4.6 59.1 1.0 N C:PHE14 4.9 84.7 1.0 F2 C:BEF130 5.0 67.5 1.0 N C:ASP13 5.0 70.2 1.0 CG C:ASP12 5.0 82.3 1.0 N C:ASN59 5.0 66.1 1.0

S.Y.Lee, H.S.Cho, J.G.Pelton, D.Yan, R.K.Henderson, D.S.King, L.Huang, S.Kustu, E.A.Berry, D.E.Wemmer. Crystal Structure of An Activated Response Regulator Bound to Its Target. Nat.Struct.Biol. V. 8 52 2001.
ISSN: ISSN 1072-8368
PubMed: 11135671
DOI: 10.1038/83053