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Magnesium in PDB 1fdg: Binding of A Macrocyclic Bisacridine and Ametantrone to Cgtacg Involves Similar Unusual Intercalation Platforms (Ametantrone Complex)

Protein crystallography data

The structure of Binding of A Macrocyclic Bisacridine and Ametantrone to Cgtacg Involves Similar Unusual Intercalation Platforms (Ametantrone Complex), PDB code: 1fdg was solved by X.-L.Yang, H.Robinson, Y.-G.Gao, A.H.-J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.60
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 29.094, 52.714, 40.183, 90.00, 90.00, 90.00
R / Rfree (%) 26.4 / 31.4

Other elements in 1fdg:

The structure of Binding of A Macrocyclic Bisacridine and Ametantrone to Cgtacg Involves Similar Unusual Intercalation Platforms (Ametantrone Complex) also contains other interesting chemical elements:

Cobalt (Co) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Binding of A Macrocyclic Bisacridine and Ametantrone to Cgtacg Involves Similar Unusual Intercalation Platforms (Ametantrone Complex) (pdb code 1fdg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Binding of A Macrocyclic Bisacridine and Ametantrone to Cgtacg Involves Similar Unusual Intercalation Platforms (Ametantrone Complex), PDB code: 1fdg:

Magnesium binding site 1 out of 1 in 1fdg

Go back to Magnesium Binding Sites List in 1fdg
Magnesium binding site 1 out of 1 in the Binding of A Macrocyclic Bisacridine and Ametantrone to Cgtacg Involves Similar Unusual Intercalation Platforms (Ametantrone Complex)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Binding of A Macrocyclic Bisacridine and Ametantrone to Cgtacg Involves Similar Unusual Intercalation Platforms (Ametantrone Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg23

b:68.5
occ:0.50
OP2 B:DG8 2.6 43.0 1.0
C3 B:9TA13 4.0 43.6 0.5
P B:DG8 4.0 50.5 1.0
O4' B:DG8 4.1 45.1 1.0
C2 B:9TA13 4.3 43.1 0.5
C5' B:DG8 4.4 45.7 1.0
O3' B:DC7 4.6 38.2 1.0
O5' B:DG8 4.7 44.0 1.0
C4' B:DG8 4.8 44.1 1.0
C8 B:DG8 4.9 25.2 1.0

Reference:

X.L.Yang, H.Robinson, Y.G.Gao, A.H.Wang. Binding of A Macrocyclic Bisacridine and Ametantrone to Cgtacg Involves Similar Unusual Intercalation Platforms. Biochemistry V. 39 10950 2000.
ISSN: ISSN 0006-2960
PubMed: 10998231
DOI: 10.1021/BI001319Z
Page generated: Sat Aug 9 20:56:55 2025

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