Magnesium in PDB 1fe1: Crystal Structure Photosystem II

The structure of Crystal Structure Photosystem II, PDB code: 1fe1 was solved by A.Zouni, H.-T.Witt, J.Kern, P.Fromme, N.Krauss, W.Saenger, P.Orth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 3.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	130.010, 226.720, 308.290, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The structure of Crystal Structure Photosystem II also contains other interesting chemical elements:

Cadmium	(Cd)	2 atoms
Manganese	(Mn)	8 atoms
Iron	(Fe)	6 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 64;

Binding sites:

The binding sites of Magnesium atom in the Crystal Structure Photosystem II (pdb code 1fe1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 64 binding sites of Magnesium where determined in the Crystal Structure Photosystem II, PDB code: 1fe1:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 64 in the Crystal Structure Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure Photosystem II within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg175 b:45.9 occ:1.00 MG A:CLA175 0.0 45.9 1.0 ND A:CLA175 2.0 45.1 1.0 NA A:CLA175 2.1 44.6 1.0 NC A:CLA175 2.1 43.8 1.0 NB A:CLA175 2.1 46.8 1.0 C4A A:CLA175 3.0 44.7 1.0 C4D A:CLA175 3.0 45.2 1.0 C1D A:CLA175 3.1 46.2 1.0 C1C A:CLA175 3.1 42.9 1.0 C4C A:CLA175 3.1 43.3 1.0 C1B A:CLA175 3.1 45.2 1.0 C1A A:CLA175 3.1 46.4 1.0 C4B A:CLA175 3.1 45.0 1.0 CHC A:CLA175 3.4 44.6 1.0 CHB A:CLA175 3.4 44.7 1.0 CHD A:CLA175 3.4 44.0 1.0 CHA A:CLA175 3.4 45.6 1.0 C2D A:CLA175 4.2 47.3 1.0 C3D A:CLA175 4.3 45.8 1.0 C2B A:CLA175 4.3 45.0 1.0 C3B A:CLA175 4.3 45.6 1.0 C3A A:CLA175 4.4 45.4 1.0 C2C A:CLA175 4.4 40.4 1.0 C2A A:CLA175 4.4 46.1 1.0 C3C A:CLA175 4.4 40.1 1.0

Magnesium binding site 2 out of 64 in the Crystal Structure Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure Photosystem II within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg177 b:45.9 occ:1.00 MG B:CLA177 0.0 45.9 1.0 ND B:CLA177 2.0 45.1 1.0 NA B:CLA177 2.1 44.6 1.0 NC B:CLA177 2.1 43.8 1.0 NB B:CLA177 2.1 46.8 1.0 C4A B:CLA177 3.0 44.7 1.0 C4D B:CLA177 3.0 45.2 1.0 C1D B:CLA177 3.1 46.2 1.0 C1C B:CLA177 3.1 42.9 1.0 C4C B:CLA177 3.1 43.3 1.0 C1B B:CLA177 3.1 45.2 1.0 C1A B:CLA177 3.1 46.4 1.0 C4B B:CLA177 3.1 45.0 1.0 CHC B:CLA177 3.4 44.6 1.0 CHB B:CLA177 3.4 44.7 1.0 CHD B:CLA177 3.4 44.0 1.0 CHA B:CLA177 3.4 45.6 1.0 C2D B:CLA177 4.2 47.3 1.0 C3D B:CLA177 4.3 45.8 1.0 C2B B:CLA177 4.3 45.0 1.0 C3B B:CLA177 4.3 45.6 1.0 C3A B:CLA177 4.4 45.4 1.0 C2C B:CLA177 4.4 40.4 1.0 C2A B:CLA177 4.4 46.1 1.0 C3C B:CLA177 4.4 40.1 1.0

Magnesium binding site 3 out of 64 in the Crystal Structure Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure Photosystem II within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg176 b:45.9 occ:1.00 MG A:CLA176 0.0 45.9 1.0 ND A:CLA176 2.0 45.1 1.0 NA A:CLA176 2.1 44.6 1.0 NC A:CLA176 2.1 43.8 1.0 NB A:CLA176 2.1 46.8 1.0 C4A A:CLA176 3.0 44.7 1.0 C4D A:CLA176 3.0 45.2 1.0 C1D A:CLA176 3.1 46.2 1.0 C1C A:CLA176 3.1 42.9 1.0 C4C A:CLA176 3.1 43.3 1.0 C1B A:CLA176 3.1 45.2 1.0 C1A A:CLA176 3.1 46.4 1.0 C4B A:CLA176 3.1 45.0 1.0 CHC A:CLA176 3.4 44.6 1.0 CHB A:CLA176 3.4 44.7 1.0 CHD A:CLA176 3.4 44.0 1.0 CHA A:CLA176 3.4 45.6 1.0 C2D A:CLA176 4.2 47.3 1.0 C3D A:CLA176 4.3 45.8 1.0 C2B A:CLA176 4.3 45.0 1.0 C3B A:CLA176 4.3 45.6 1.0 C3A A:CLA176 4.4 45.4 1.0 C2C A:CLA176 4.4 40.4 1.0 C2A A:CLA176 4.4 46.1 1.0 C3C A:CLA176 4.4 40.1 1.0

Magnesium binding site 4 out of 64 in the Crystal Structure Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure Photosystem II within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg177 b:45.9 occ:1.00 MG A:CLA177 0.0 45.9 1.0 ND A:CLA177 2.0 45.1 1.0 NA A:CLA177 2.1 44.6 1.0 NC A:CLA177 2.1 43.8 1.0 NB A:CLA177 2.1 46.8 1.0 C4A A:CLA177 3.0 44.7 1.0 C4D A:CLA177 3.0 45.2 1.0 C1D A:CLA177 3.1 46.2 1.0 C1C A:CLA177 3.1 42.9 1.0 C4C A:CLA177 3.1 43.3 1.0 C1B A:CLA177 3.1 45.2 1.0 C1A A:CLA177 3.1 46.4 1.0 C4B A:CLA177 3.1 45.0 1.0 CHC A:CLA177 3.4 44.6 1.0 CHB A:CLA177 3.4 44.7 1.0 CHD A:CLA177 3.4 44.0 1.0 CHA A:CLA177 3.4 45.6 1.0 C2D A:CLA177 4.2 47.3 1.0 C3D A:CLA177 4.3 45.8 1.0 C2B A:CLA177 4.3 45.0 1.0 C3B A:CLA177 4.3 45.6 1.0 C3A A:CLA177 4.4 45.4 1.0 C2C A:CLA177 4.4 40.4 1.0 C2A A:CLA177 4.4 46.1 1.0 C3C A:CLA177 4.4 40.1 1.0

Magnesium binding site 5 out of 64 in the Crystal Structure Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure Photosystem II within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg179 b:45.9 occ:1.00 MG A:CLA179 0.0 45.9 1.0 ND A:CLA179 2.0 45.1 1.0 NA A:CLA179 2.1 44.6 1.0 NC A:CLA179 2.1 43.8 1.0 NB A:CLA179 2.1 46.8 1.0 C4A A:CLA179 3.0 44.7 1.0 C4D A:CLA179 3.0 45.2 1.0 C1D A:CLA179 3.1 46.2 1.0 C1C A:CLA179 3.1 42.9 1.0 C4C A:CLA179 3.1 43.3 1.0 C1B A:CLA179 3.1 45.2 1.0 C1A A:CLA179 3.1 46.4 1.0 C4B A:CLA179 3.1 45.0 1.0 CHC A:CLA179 3.4 44.6 1.0 CHB A:CLA179 3.4 44.7 1.0 CHD A:CLA179 3.4 44.0 1.0 CHA A:CLA179 3.4 45.6 1.0 C2D A:CLA179 4.2 47.3 1.0 C3D A:CLA179 4.3 45.8 1.0 C2B A:CLA179 4.3 45.0 1.0 C3B A:CLA179 4.3 45.6 1.0 C3A A:CLA179 4.4 45.4 1.0 C2C A:CLA179 4.4 40.4 1.0 C2A A:CLA179 4.4 46.1 1.0 C3C A:CLA179 4.4 40.1 1.0

Magnesium binding site 6 out of 64 in the Crystal Structure Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure Photosystem II within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg179 b:45.9 occ:1.00 MG B:CLA179 0.0 45.9 1.0 ND B:CLA179 2.0 45.1 1.0 NA B:CLA179 2.1 44.6 1.0 NC B:CLA179 2.1 43.8 1.0 NB B:CLA179 2.1 46.8 1.0 C4A B:CLA179 3.0 44.7 1.0 C4D B:CLA179 3.0 45.2 1.0 C1D B:CLA179 3.1 46.2 1.0 C1C B:CLA179 3.1 42.9 1.0 C4C B:CLA179 3.1 43.3 1.0 C1B B:CLA179 3.1 45.2 1.0 C1A B:CLA179 3.1 46.4 1.0 C4B B:CLA179 3.1 45.0 1.0 CHC B:CLA179 3.4 44.6 1.0 CHB B:CLA179 3.4 44.7 1.0 CHD B:CLA179 3.4 44.0 1.0 CHA B:CLA179 3.4 45.6 1.0 C2D B:CLA179 4.2 47.3 1.0 C3D B:CLA179 4.3 45.8 1.0 C2B B:CLA179 4.3 45.0 1.0 C3B B:CLA179 4.3 45.6 1.0 C3A B:CLA179 4.4 45.4 1.0 C2C B:CLA179 4.4 40.4 1.0 C2A B:CLA179 4.4 46.1 1.0 C3C B:CLA179 4.4 40.1 1.0

Magnesium binding site 7 out of 64 in the Crystal Structure Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure Photosystem II within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg157 b:45.9 occ:1.00 MG C:CLA157 0.0 45.9 1.0 ND C:CLA157 2.0 45.1 1.0 NA C:CLA157 2.1 44.6 1.0 NC C:CLA157 2.1 43.8 1.0 NB C:CLA157 2.1 46.8 1.0 C4A C:CLA157 3.0 44.7 1.0 C4D C:CLA157 3.0 45.2 1.0 C1D C:CLA157 3.1 46.2 1.0 C1C C:CLA157 3.1 42.9 1.0 C4C C:CLA157 3.1 43.3 1.0 C1B C:CLA157 3.1 45.2 1.0 C1A C:CLA157 3.1 46.4 1.0 C4B C:CLA157 3.1 45.0 1.0 CHC C:CLA157 3.4 44.6 1.0 CHB C:CLA157 3.4 44.7 1.0 CHD C:CLA157 3.4 44.0 1.0 CHA C:CLA157 3.4 45.6 1.0 C2D C:CLA157 4.2 47.3 1.0 C3D C:CLA157 4.3 45.8 1.0 C2B C:CLA157 4.3 45.0 1.0 C3B C:CLA157 4.3 45.6 1.0 C3A C:CLA157 4.4 45.4 1.0 C2C C:CLA157 4.4 40.4 1.0 C2A C:CLA157 4.4 46.1 1.0 C3C C:CLA157 4.4 40.1 1.0

Magnesium binding site 8 out of 64 in the Crystal Structure Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Structure Photosystem II within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg158 b:45.9 occ:1.00 MG C:CLA158 0.0 45.9 1.0 ND C:CLA158 2.0 45.1 1.0 NA C:CLA158 2.1 44.6 1.0 NC C:CLA158 2.1 43.8 1.0 NB C:CLA158 2.1 46.8 1.0 C4A C:CLA158 3.0 44.7 1.0 C4D C:CLA158 3.0 45.2 1.0 C1D C:CLA158 3.1 46.2 1.0 C1C C:CLA158 3.1 42.9 1.0 C4C C:CLA158 3.1 43.3 1.0 C1B C:CLA158 3.1 45.2 1.0 C1A C:CLA158 3.1 46.4 1.0 C4B C:CLA158 3.1 45.0 1.0 CHC C:CLA158 3.4 44.6 1.0 CHB C:CLA158 3.4 44.7 1.0 CHD C:CLA158 3.4 44.0 1.0 CHA C:CLA158 3.4 45.6 1.0 C2D C:CLA158 4.2 47.3 1.0 C3D C:CLA158 4.3 45.8 1.0 C2B C:CLA158 4.3 45.0 1.0 C3B C:CLA158 4.3 45.6 1.0 C3A C:CLA158 4.4 45.4 1.0 C2C C:CLA158 4.4 40.4 1.0 C2A C:CLA158 4.4 46.1 1.0 C3C C:CLA158 4.4 40.1 1.0

Magnesium binding site 9 out of 64 in the Crystal Structure Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Crystal Structure Photosystem II within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg159 b:45.9 occ:1.00 MG C:CLA159 0.0 45.9 1.0 ND C:CLA159 2.0 45.1 1.0 NA C:CLA159 2.1 44.6 1.0 NC C:CLA159 2.1 43.8 1.0 NB C:CLA159 2.1 46.8 1.0 C4A C:CLA159 3.0 44.7 1.0 C4D C:CLA159 3.0 45.2 1.0 C1D C:CLA159 3.1 46.2 1.0 C1C C:CLA159 3.1 42.9 1.0 C4C C:CLA159 3.1 43.3 1.0 C1B C:CLA159 3.1 45.2 1.0 C1A C:CLA159 3.1 46.4 1.0 C4B C:CLA159 3.1 45.0 1.0 CHC C:CLA159 3.4 44.6 1.0 CHB C:CLA159 3.4 44.7 1.0 CHD C:CLA159 3.4 44.0 1.0 CHA C:CLA159 3.4 45.6 1.0 C2D C:CLA159 4.2 47.3 1.0 C3D C:CLA159 4.3 45.8 1.0 C2B C:CLA159 4.3 45.0 1.0 C3B C:CLA159 4.3 45.6 1.0 C3A C:CLA159 4.4 45.4 1.0 C2C C:CLA159 4.4 40.4 1.0 C2A C:CLA159 4.4 46.1 1.0 C3C C:CLA159 4.4 40.1 1.0

Magnesium binding site 10 out of 64 in the Crystal Structure Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Crystal Structure Photosystem II within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg160 b:45.9 occ:1.00 MG C:CLA160 0.0 45.9 1.0 ND C:CLA160 2.0 45.1 1.0 NA C:CLA160 2.1 44.6 1.0 NC C:CLA160 2.1 43.8 1.0 NB C:CLA160 2.1 46.8 1.0 C4A C:CLA160 3.0 44.7 1.0 C4D C:CLA160 3.0 45.2 1.0 C1D C:CLA160 3.1 46.2 1.0 C1C C:CLA160 3.1 42.9 1.0 C4C C:CLA160 3.1 43.3 1.0 C1B C:CLA160 3.1 45.2 1.0 C1A C:CLA160 3.1 46.4 1.0 C4B C:CLA160 3.1 45.0 1.0 CHC C:CLA160 3.4 44.6 1.0 CHB C:CLA160 3.4 44.7 1.0 CHD C:CLA160 3.4 44.0 1.0 CHA C:CLA160 3.4 45.6 1.0 C2D C:CLA160 4.2 47.3 1.0 C3D C:CLA160 4.3 45.8 1.0 C2B C:CLA160 4.3 45.0 1.0 C3B C:CLA160 4.3 45.6 1.0 C3A C:CLA160 4.4 45.4 1.0 C2C C:CLA160 4.4 40.4 1.0 C2A C:CLA160 4.4 46.1 1.0 C3C C:CLA160 4.4 40.1 1.0

A.Zouni, H.T.Witt, J.Kern, P.Fromme, N.Krauss, W.Saenger, P.Orth. Crystal Structure of Photosystem II From Synechococcus Elongatus at 3.8 A Resolution. Nature V. 409 739 2001.
ISSN: ISSN 0028-0836
PubMed: 11217865
DOI: 10.1038/35055589