Atomistry » Magnesium » PDB 1f7d-1fnt » 1fe1
Atomistry »
  Magnesium »
    PDB 1f7d-1fnt »
      1fe1 »

Magnesium in PDB 1fe1: Crystal Structure Photosystem II

Protein crystallography data

The structure of Crystal Structure Photosystem II, PDB code: 1fe1 was solved by A.Zouni, H.-T.Witt, J.Kern, P.Fromme, N.Krauss, W.Saenger, P.Orth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 130.010, 226.720, 308.290, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Other elements in 1fe1:

The structure of Crystal Structure Photosystem II also contains other interesting chemical elements:

Cadmium (Cd) 2 atoms
Manganese (Mn) 8 atoms
Iron (Fe) 6 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 64;

Binding sites:

The binding sites of Magnesium atom in the Crystal Structure Photosystem II (pdb code 1fe1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 64 binding sites of Magnesium where determined in the Crystal Structure Photosystem II, PDB code: 1fe1:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 64 in 1fe1

Go back to Magnesium Binding Sites List in 1fe1
Magnesium binding site 1 out of 64 in the Crystal Structure Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg175

b:45.9
occ:1.00
MG A:CLA175 0.0 45.9 1.0
ND A:CLA175 2.0 45.1 1.0
NA A:CLA175 2.1 44.6 1.0
NC A:CLA175 2.1 43.8 1.0
NB A:CLA175 2.1 46.8 1.0
C4A A:CLA175 3.0 44.7 1.0
C4D A:CLA175 3.0 45.2 1.0
C1D A:CLA175 3.1 46.2 1.0
C1C A:CLA175 3.1 42.9 1.0
C4C A:CLA175 3.1 43.3 1.0
C1B A:CLA175 3.1 45.2 1.0
C1A A:CLA175 3.1 46.4 1.0
C4B A:CLA175 3.1 45.0 1.0
CHC A:CLA175 3.4 44.6 1.0
CHB A:CLA175 3.4 44.7 1.0
CHD A:CLA175 3.4 44.0 1.0
CHA A:CLA175 3.4 45.6 1.0
C2D A:CLA175 4.2 47.3 1.0
C3D A:CLA175 4.3 45.8 1.0
C2B A:CLA175 4.3 45.0 1.0
C3B A:CLA175 4.3 45.6 1.0
C3A A:CLA175 4.4 45.4 1.0
C2C A:CLA175 4.4 40.4 1.0
C2A A:CLA175 4.4 46.1 1.0
C3C A:CLA175 4.4 40.1 1.0

Magnesium binding site 2 out of 64 in 1fe1

Go back to Magnesium Binding Sites List in 1fe1
Magnesium binding site 2 out of 64 in the Crystal Structure Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg177

b:45.9
occ:1.00
MG B:CLA177 0.0 45.9 1.0
ND B:CLA177 2.0 45.1 1.0
NA B:CLA177 2.1 44.6 1.0
NC B:CLA177 2.1 43.8 1.0
NB B:CLA177 2.1 46.8 1.0
C4A B:CLA177 3.0 44.7 1.0
C4D B:CLA177 3.0 45.2 1.0
C1D B:CLA177 3.1 46.2 1.0
C1C B:CLA177 3.1 42.9 1.0
C4C B:CLA177 3.1 43.3 1.0
C1B B:CLA177 3.1 45.2 1.0
C1A B:CLA177 3.1 46.4 1.0
C4B B:CLA177 3.1 45.0 1.0
CHC B:CLA177 3.4 44.6 1.0
CHB B:CLA177 3.4 44.7 1.0
CHD B:CLA177 3.4 44.0 1.0
CHA B:CLA177 3.4 45.6 1.0
C2D B:CLA177 4.2 47.3 1.0
C3D B:CLA177 4.3 45.8 1.0
C2B B:CLA177 4.3 45.0 1.0
C3B B:CLA177 4.3 45.6 1.0
C3A B:CLA177 4.4 45.4 1.0
C2C B:CLA177 4.4 40.4 1.0
C2A B:CLA177 4.4 46.1 1.0
C3C B:CLA177 4.4 40.1 1.0

Magnesium binding site 3 out of 64 in 1fe1

Go back to Magnesium Binding Sites List in 1fe1
Magnesium binding site 3 out of 64 in the Crystal Structure Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg176

b:45.9
occ:1.00
MG A:CLA176 0.0 45.9 1.0
ND A:CLA176 2.0 45.1 1.0
NA A:CLA176 2.1 44.6 1.0
NC A:CLA176 2.1 43.8 1.0
NB A:CLA176 2.1 46.8 1.0
C4A A:CLA176 3.0 44.7 1.0
C4D A:CLA176 3.0 45.2 1.0
C1D A:CLA176 3.1 46.2 1.0
C1C A:CLA176 3.1 42.9 1.0
C4C A:CLA176 3.1 43.3 1.0
C1B A:CLA176 3.1 45.2 1.0
C1A A:CLA176 3.1 46.4 1.0
C4B A:CLA176 3.1 45.0 1.0
CHC A:CLA176 3.4 44.6 1.0
CHB A:CLA176 3.4 44.7 1.0
CHD A:CLA176 3.4 44.0 1.0
CHA A:CLA176 3.4 45.6 1.0
C2D A:CLA176 4.2 47.3 1.0
C3D A:CLA176 4.3 45.8 1.0
C2B A:CLA176 4.3 45.0 1.0
C3B A:CLA176 4.3 45.6 1.0
C3A A:CLA176 4.4 45.4 1.0
C2C A:CLA176 4.4 40.4 1.0
C2A A:CLA176 4.4 46.1 1.0
C3C A:CLA176 4.4 40.1 1.0

Magnesium binding site 4 out of 64 in 1fe1

Go back to Magnesium Binding Sites List in 1fe1
Magnesium binding site 4 out of 64 in the Crystal Structure Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg177

b:45.9
occ:1.00
MG A:CLA177 0.0 45.9 1.0
ND A:CLA177 2.0 45.1 1.0
NA A:CLA177 2.1 44.6 1.0
NC A:CLA177 2.1 43.8 1.0
NB A:CLA177 2.1 46.8 1.0
C4A A:CLA177 3.0 44.7 1.0
C4D A:CLA177 3.0 45.2 1.0
C1D A:CLA177 3.1 46.2 1.0
C1C A:CLA177 3.1 42.9 1.0
C4C A:CLA177 3.1 43.3 1.0
C1B A:CLA177 3.1 45.2 1.0
C1A A:CLA177 3.1 46.4 1.0
C4B A:CLA177 3.1 45.0 1.0
CHC A:CLA177 3.4 44.6 1.0
CHB A:CLA177 3.4 44.7 1.0
CHD A:CLA177 3.4 44.0 1.0
CHA A:CLA177 3.4 45.6 1.0
C2D A:CLA177 4.2 47.3 1.0
C3D A:CLA177 4.3 45.8 1.0
C2B A:CLA177 4.3 45.0 1.0
C3B A:CLA177 4.3 45.6 1.0
C3A A:CLA177 4.4 45.4 1.0
C2C A:CLA177 4.4 40.4 1.0
C2A A:CLA177 4.4 46.1 1.0
C3C A:CLA177 4.4 40.1 1.0

Magnesium binding site 5 out of 64 in 1fe1

Go back to Magnesium Binding Sites List in 1fe1
Magnesium binding site 5 out of 64 in the Crystal Structure Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg179

b:45.9
occ:1.00
MG A:CLA179 0.0 45.9 1.0
ND A:CLA179 2.0 45.1 1.0
NA A:CLA179 2.1 44.6 1.0
NC A:CLA179 2.1 43.8 1.0
NB A:CLA179 2.1 46.8 1.0
C4A A:CLA179 3.0 44.7 1.0
C4D A:CLA179 3.0 45.2 1.0
C1D A:CLA179 3.1 46.2 1.0
C1C A:CLA179 3.1 42.9 1.0
C4C A:CLA179 3.1 43.3 1.0
C1B A:CLA179 3.1 45.2 1.0
C1A A:CLA179 3.1 46.4 1.0
C4B A:CLA179 3.1 45.0 1.0
CHC A:CLA179 3.4 44.6 1.0
CHB A:CLA179 3.4 44.7 1.0
CHD A:CLA179 3.4 44.0 1.0
CHA A:CLA179 3.4 45.6 1.0
C2D A:CLA179 4.2 47.3 1.0
C3D A:CLA179 4.3 45.8 1.0
C2B A:CLA179 4.3 45.0 1.0
C3B A:CLA179 4.3 45.6 1.0
C3A A:CLA179 4.4 45.4 1.0
C2C A:CLA179 4.4 40.4 1.0
C2A A:CLA179 4.4 46.1 1.0
C3C A:CLA179 4.4 40.1 1.0

Magnesium binding site 6 out of 64 in 1fe1

Go back to Magnesium Binding Sites List in 1fe1
Magnesium binding site 6 out of 64 in the Crystal Structure Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg179

b:45.9
occ:1.00
MG B:CLA179 0.0 45.9 1.0
ND B:CLA179 2.0 45.1 1.0
NA B:CLA179 2.1 44.6 1.0
NC B:CLA179 2.1 43.8 1.0
NB B:CLA179 2.1 46.8 1.0
C4A B:CLA179 3.0 44.7 1.0
C4D B:CLA179 3.0 45.2 1.0
C1D B:CLA179 3.1 46.2 1.0
C1C B:CLA179 3.1 42.9 1.0
C4C B:CLA179 3.1 43.3 1.0
C1B B:CLA179 3.1 45.2 1.0
C1A B:CLA179 3.1 46.4 1.0
C4B B:CLA179 3.1 45.0 1.0
CHC B:CLA179 3.4 44.6 1.0
CHB B:CLA179 3.4 44.7 1.0
CHD B:CLA179 3.4 44.0 1.0
CHA B:CLA179 3.4 45.6 1.0
C2D B:CLA179 4.2 47.3 1.0
C3D B:CLA179 4.3 45.8 1.0
C2B B:CLA179 4.3 45.0 1.0
C3B B:CLA179 4.3 45.6 1.0
C3A B:CLA179 4.4 45.4 1.0
C2C B:CLA179 4.4 40.4 1.0
C2A B:CLA179 4.4 46.1 1.0
C3C B:CLA179 4.4 40.1 1.0

Magnesium binding site 7 out of 64 in 1fe1

Go back to Magnesium Binding Sites List in 1fe1
Magnesium binding site 7 out of 64 in the Crystal Structure Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg157

b:45.9
occ:1.00
MG C:CLA157 0.0 45.9 1.0
ND C:CLA157 2.0 45.1 1.0
NA C:CLA157 2.1 44.6 1.0
NC C:CLA157 2.1 43.8 1.0
NB C:CLA157 2.1 46.8 1.0
C4A C:CLA157 3.0 44.7 1.0
C4D C:CLA157 3.0 45.2 1.0
C1D C:CLA157 3.1 46.2 1.0
C1C C:CLA157 3.1 42.9 1.0
C4C C:CLA157 3.1 43.3 1.0
C1B C:CLA157 3.1 45.2 1.0
C1A C:CLA157 3.1 46.4 1.0
C4B C:CLA157 3.1 45.0 1.0
CHC C:CLA157 3.4 44.6 1.0
CHB C:CLA157 3.4 44.7 1.0
CHD C:CLA157 3.4 44.0 1.0
CHA C:CLA157 3.4 45.6 1.0
C2D C:CLA157 4.2 47.3 1.0
C3D C:CLA157 4.3 45.8 1.0
C2B C:CLA157 4.3 45.0 1.0
C3B C:CLA157 4.3 45.6 1.0
C3A C:CLA157 4.4 45.4 1.0
C2C C:CLA157 4.4 40.4 1.0
C2A C:CLA157 4.4 46.1 1.0
C3C C:CLA157 4.4 40.1 1.0

Magnesium binding site 8 out of 64 in 1fe1

Go back to Magnesium Binding Sites List in 1fe1
Magnesium binding site 8 out of 64 in the Crystal Structure Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Structure Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg158

b:45.9
occ:1.00
MG C:CLA158 0.0 45.9 1.0
ND C:CLA158 2.0 45.1 1.0
NA C:CLA158 2.1 44.6 1.0
NC C:CLA158 2.1 43.8 1.0
NB C:CLA158 2.1 46.8 1.0
C4A C:CLA158 3.0 44.7 1.0
C4D C:CLA158 3.0 45.2 1.0
C1D C:CLA158 3.1 46.2 1.0
C1C C:CLA158 3.1 42.9 1.0
C4C C:CLA158 3.1 43.3 1.0
C1B C:CLA158 3.1 45.2 1.0
C1A C:CLA158 3.1 46.4 1.0
C4B C:CLA158 3.1 45.0 1.0
CHC C:CLA158 3.4 44.6 1.0
CHB C:CLA158 3.4 44.7 1.0
CHD C:CLA158 3.4 44.0 1.0
CHA C:CLA158 3.4 45.6 1.0
C2D C:CLA158 4.2 47.3 1.0
C3D C:CLA158 4.3 45.8 1.0
C2B C:CLA158 4.3 45.0 1.0
C3B C:CLA158 4.3 45.6 1.0
C3A C:CLA158 4.4 45.4 1.0
C2C C:CLA158 4.4 40.4 1.0
C2A C:CLA158 4.4 46.1 1.0
C3C C:CLA158 4.4 40.1 1.0

Magnesium binding site 9 out of 64 in 1fe1

Go back to Magnesium Binding Sites List in 1fe1
Magnesium binding site 9 out of 64 in the Crystal Structure Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Crystal Structure Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg159

b:45.9
occ:1.00
MG C:CLA159 0.0 45.9 1.0
ND C:CLA159 2.0 45.1 1.0
NA C:CLA159 2.1 44.6 1.0
NC C:CLA159 2.1 43.8 1.0
NB C:CLA159 2.1 46.8 1.0
C4A C:CLA159 3.0 44.7 1.0
C4D C:CLA159 3.0 45.2 1.0
C1D C:CLA159 3.1 46.2 1.0
C1C C:CLA159 3.1 42.9 1.0
C4C C:CLA159 3.1 43.3 1.0
C1B C:CLA159 3.1 45.2 1.0
C1A C:CLA159 3.1 46.4 1.0
C4B C:CLA159 3.1 45.0 1.0
CHC C:CLA159 3.4 44.6 1.0
CHB C:CLA159 3.4 44.7 1.0
CHD C:CLA159 3.4 44.0 1.0
CHA C:CLA159 3.4 45.6 1.0
C2D C:CLA159 4.2 47.3 1.0
C3D C:CLA159 4.3 45.8 1.0
C2B C:CLA159 4.3 45.0 1.0
C3B C:CLA159 4.3 45.6 1.0
C3A C:CLA159 4.4 45.4 1.0
C2C C:CLA159 4.4 40.4 1.0
C2A C:CLA159 4.4 46.1 1.0
C3C C:CLA159 4.4 40.1 1.0

Magnesium binding site 10 out of 64 in 1fe1

Go back to Magnesium Binding Sites List in 1fe1
Magnesium binding site 10 out of 64 in the Crystal Structure Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Crystal Structure Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg160

b:45.9
occ:1.00
MG C:CLA160 0.0 45.9 1.0
ND C:CLA160 2.0 45.1 1.0
NA C:CLA160 2.1 44.6 1.0
NC C:CLA160 2.1 43.8 1.0
NB C:CLA160 2.1 46.8 1.0
C4A C:CLA160 3.0 44.7 1.0
C4D C:CLA160 3.0 45.2 1.0
C1D C:CLA160 3.1 46.2 1.0
C1C C:CLA160 3.1 42.9 1.0
C4C C:CLA160 3.1 43.3 1.0
C1B C:CLA160 3.1 45.2 1.0
C1A C:CLA160 3.1 46.4 1.0
C4B C:CLA160 3.1 45.0 1.0
CHC C:CLA160 3.4 44.6 1.0
CHB C:CLA160 3.4 44.7 1.0
CHD C:CLA160 3.4 44.0 1.0
CHA C:CLA160 3.4 45.6 1.0
C2D C:CLA160 4.2 47.3 1.0
C3D C:CLA160 4.3 45.8 1.0
C2B C:CLA160 4.3 45.0 1.0
C3B C:CLA160 4.3 45.6 1.0
C3A C:CLA160 4.4 45.4 1.0
C2C C:CLA160 4.4 40.4 1.0
C2A C:CLA160 4.4 46.1 1.0
C3C C:CLA160 4.4 40.1 1.0

Reference:

A.Zouni, H.T.Witt, J.Kern, P.Fromme, N.Krauss, W.Saenger, P.Orth. Crystal Structure of Photosystem II From Synechococcus Elongatus at 3.8 A Resolution. Nature V. 409 739 2001.
ISSN: ISSN 0028-0836
PubMed: 11217865
DOI: 10.1038/35055589
Page generated: Mon Dec 14 05:55:40 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy