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Magnesium in PDB 1fi1: Fhua in Complex with Lipopolysaccharide and Rifamycin CGP4832

Protein crystallography data

The structure of Fhua in Complex with Lipopolysaccharide and Rifamycin CGP4832, PDB code: 1fi1 was solved by A.D.Ferguson, J.Koedding, C.Boes, G.Walker, J.W.Coulton, K.Diederichs, V.Braun, W.Welte, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.90
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 172.820, 172.820, 87.910, 90.00, 90.00, 120.00
R / Rfree (%) 23.3 / 27.5

Other elements in 1fi1:

The structure of Fhua in Complex with Lipopolysaccharide and Rifamycin CGP4832 also contains other interesting chemical elements:

Nickel (Ni) 1 atom
Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Fhua in Complex with Lipopolysaccharide and Rifamycin CGP4832 (pdb code 1fi1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Fhua in Complex with Lipopolysaccharide and Rifamycin CGP4832, PDB code: 1fi1:

Magnesium binding site 1 out of 1 in 1fi1

Go back to Magnesium Binding Sites List in 1fi1
Magnesium binding site 1 out of 1 in the Fhua in Complex with Lipopolysaccharide and Rifamycin CGP4832


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Fhua in Complex with Lipopolysaccharide and Rifamycin CGP4832 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1025

b:90.9
occ:1.00
N A:LYS485 3.4 67.3 1.0
OD1 A:ASP484 3.5 68.0 1.0
CA A:ASP484 3.7 71.4 1.0
NE2 A:GLN486 3.7 71.0 1.0
NH2 A:ARG482 3.8 76.8 1.0
O A:LYS485 3.8 64.1 1.0
CB A:ASP484 3.8 71.8 1.0
C A:ASP484 4.1 70.6 1.0
OE1 A:GLN486 4.1 80.8 1.0
CG A:ASP484 4.2 74.8 1.0
CD A:GLN486 4.3 74.5 1.0
C A:LYS485 4.3 66.4 1.0
CA A:LYS485 4.5 65.6 1.0
CD A:PRO526 4.5 69.2 1.0
O A:ASP483 4.6 74.3 1.0
CG A:PRO526 4.7 69.1 1.0
CZ A:ARG482 4.8 79.0 1.0
NE A:ARG482 4.9 71.7 1.0
N A:ASP484 4.9 73.0 1.0
CB A:LYS485 5.0 69.2 1.0

Reference:

A.D.Ferguson, J.Kodding, G.Walker, C.Bos, J.W.Coulton, K.Diederichs, V.Braun, W.Welte. Active Transport of An Antibiotic Rifamycin Derivative By the Outer-Membrane Protein Fhua. Structure V. 9 707 2001.
ISSN: ISSN 0969-2126
PubMed: 11587645
DOI: 10.1016/S0969-2126(01)00631-1
Page generated: Tue Aug 13 03:16:06 2024

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