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Magnesium in PDB 1g8x: Structure of A Genetically Engineered Molecular Motor

Protein crystallography data

The structure of Structure of A Genetically Engineered Molecular Motor, PDB code: 1g8x was solved by W.Kliche, S.Fujita-Becker, M.Kollmar, D.J.Manstein, F.J.Kull, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.15 / 2.80
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 135.423, 155.420, 143.191, 90.00, 90.00, 90.00
R / Rfree (%) 23.2 / 29

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of A Genetically Engineered Molecular Motor (pdb code 1g8x). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of A Genetically Engineered Molecular Motor, PDB code: 1g8x:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 1g8x

Go back to Magnesium Binding Sites List in 1g8x
Magnesium binding site 1 out of 2 in the Structure of A Genetically Engineered Molecular Motor


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Genetically Engineered Molecular Motor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1101

b:21.8
occ:1.00
O A:HOH1201 2.2 21.4 1.0
O A:HOH1202 2.3 28.8 1.0
O A:HOH1203 2.4 29.2 1.0
O2B A:ADP1100 2.4 23.6 1.0
OG1 A:THR186 2.4 23.1 1.0
OG A:SER237 2.5 25.5 1.0
CB A:SER237 2.9 26.2 1.0
O3B A:ADP1100 3.0 20.4 1.0
PB A:ADP1100 3.2 23.5 1.0
CB A:THR186 3.6 24.6 1.0
N A:SER237 3.8 25.1 1.0
CA A:SER237 3.9 26.1 1.0
N A:THR186 4.2 23.8 1.0
O1B A:ADP1100 4.2 20.2 1.0
O3A A:ADP1100 4.3 19.3 1.0
O A:HOH1204 4.4 20.1 1.0
O2A A:ADP1100 4.4 20.1 1.0
OD2 A:ASP454 4.4 51.5 1.0
CA A:THR186 4.4 25.4 1.0
OD1 A:ASP454 4.4 51.8 1.0
CG2 A:THR186 4.6 19.1 1.0
CE A:LYS185 4.7 22.9 1.0
CB A:LYS185 4.7 22.0 1.0
PA A:ADP1100 4.8 22.9 1.0
NZ A:LYS185 4.8 23.0 1.0
C A:SER236 4.8 24.8 1.0
CG A:ASP454 4.9 50.0 1.0
O A:SER237 4.9 27.1 1.0
C A:SER237 5.0 27.3 1.0
O1A A:ADP1100 5.0 18.0 1.0

Magnesium binding site 2 out of 2 in 1g8x

Go back to Magnesium Binding Sites List in 1g8x
Magnesium binding site 2 out of 2 in the Structure of A Genetically Engineered Molecular Motor


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of A Genetically Engineered Molecular Motor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2101

b:23.1
occ:1.00
OG1 B:THR186 2.3 24.0 1.0
O B:HOH2204 2.3 27.4 1.0
O B:HOH2201 2.4 73.3 1.0
O2B B:ADP2100 2.4 23.1 1.0
OG B:SER237 2.5 22.5 1.0
O B:HOH2203 2.6 9.7 1.0
CB B:SER237 3.1 27.5 1.0
PB B:ADP2100 3.5 28.1 1.0
O3B B:ADP2100 3.5 24.3 1.0
CB B:THR186 3.6 20.9 1.0
N B:SER237 4.0 28.1 1.0
N B:THR186 4.1 20.2 1.0
OD1 B:ASP454 4.1 53.4 1.0
CA B:SER237 4.1 28.7 1.0
O B:HOH2202 4.2 29.9 1.0
CE B:LYS185 4.2 21.9 1.0
OD2 B:ASP454 4.2 55.2 1.0
CA B:THR186 4.3 21.3 1.0
O1B B:ADP2100 4.3 23.7 1.0
NZ B:LYS185 4.4 24.5 1.0
CG B:ASP454 4.5 51.2 1.0
O B:HOH2207 4.6 28.1 1.0
CB B:LYS185 4.6 24.2 1.0
CG2 B:THR186 4.6 21.3 1.0
O3A B:ADP2100 4.6 25.4 1.0
O2A B:ADP2100 4.7 23.2 1.0
O B:SER237 4.9 29.9 1.0
C B:LYS185 4.9 21.3 1.0

Reference:

W.Kliche, S.Fujita-Becker, M.Kollmar, D.J.Manstein, F.J.Kull. Structure of A Genetically Engineered Molecular Motor. Embo J. V. 20 40 2001.
ISSN: ISSN 0261-4189
PubMed: 11226153
DOI: 10.1093/EMBOJ/20.1.40
Page generated: Mon Dec 14 05:57:33 2020

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