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Magnesium in PDB 1gm5: Structure of Recg Bound to Three-Way Dna Junction

Protein crystallography data

The structure of Structure of Recg Bound to Three-Way Dna Junction, PDB code: 1gm5 was solved by M.R.Singleton, S.Scaife, D.B.Wigley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.24
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 133.704, 144.602, 84.023, 90.00, 113.82, 90.00
R / Rfree (%) 27.2 / 32.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Recg Bound to Three-Way Dna Junction (pdb code 1gm5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Recg Bound to Three-Way Dna Junction, PDB code: 1gm5:

Magnesium binding site 1 out of 1 in 1gm5

Go back to Magnesium Binding Sites List in 1gm5
Magnesium binding site 1 out of 1 in the Structure of Recg Bound to Three-Way Dna Junction


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Recg Bound to Three-Way Dna Junction within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1757

b:93.5
occ:1.00
CE A:MET522 2.8 0.2 1.0
O3B A:ADP1756 3.1 95.5 1.0
OG1 A:THR403 3.2 0.5 1.0
OD1 A:ASP497 4.0 0.0 1.0
OD2 A:ASP497 4.2 0.3 1.0
SD A:MET522 4.3 96.4 1.0
NE2 A:HIS433 4.3 75.7 1.0
PB A:ADP1756 4.4 79.5 1.0
CB A:THR403 4.5 92.0 1.0
N A:THR403 4.6 91.5 1.0
CG A:ASP497 4.6 95.8 1.0
CA A:THR403 4.7 94.0 1.0
CB A:LYS402 4.7 81.4 1.0
O3A A:ADP1756 4.8 76.5 1.0
CE1 A:HIS433 4.8 82.8 1.0
O1B A:ADP1756 5.0 73.9 1.0
CG2 A:THR403 5.0 53.6 1.0

Reference:

M.R.Singleton, S.Scaife, D.B.Wigley. Structural Analysis of Dna Replication Fork Reversal By Recg Cell(Cambridge,Mass.) V. 107 79 2001.
ISSN: ISSN 0092-8674
PubMed: 11595187
DOI: 10.1016/S0092-8674(01)00501-3
Page generated: Mon Dec 14 05:58:03 2020

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