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Magnesium in PDB 1gmi: Structure of the C2 Domain From Novel Protein Kinase C Epsilon

Protein crystallography data

The structure of Structure of the C2 Domain From Novel Protein Kinase C Epsilon, PDB code: 1gmi was solved by W.F.Ochoa, J.Garcia-Garcia, I.Fita, S.Corbalan-Garcia, N.Verdaguer, J.C.Gomez-Fernandez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20 / 1.7
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 40.300, 56.500, 60.300, 90.00, 90.00, 90.00
R / Rfree (%) 23.4 / 26.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the C2 Domain From Novel Protein Kinase C Epsilon (pdb code 1gmi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the C2 Domain From Novel Protein Kinase C Epsilon, PDB code: 1gmi:

Magnesium binding site 1 out of 1 in 1gmi

Go back to Magnesium Binding Sites List in 1gmi
Magnesium binding site 1 out of 1 in the Structure of the C2 Domain From Novel Protein Kinase C Epsilon


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the C2 Domain From Novel Protein Kinase C Epsilon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1137

b:34.6
occ:1.00
O A:HOH2074 1.9 25.6 1.0
O A:HOH2073 2.1 30.1 1.0
OD1 A:ASP86 2.2 23.4 1.0
CG A:ASP86 3.1 23.1 1.0
OD2 A:ASP86 3.4 23.0 1.0
OD1 A:ASP92 3.8 19.0 1.0
O A:ALA87 3.9 25.1 1.0
OD2 A:ASP92 4.1 20.2 1.0
CG A:ASP92 4.4 19.8 1.0
CB A:ASP86 4.5 22.7 1.0
CA A:ASP86 4.8 21.7 1.0
N A:ALA87 4.9 23.2 1.0
C A:ASP86 4.9 23.3 1.0
C A:ALA87 5.0 24.9 1.0

Reference:

W.F.Ochoa, J.Garcia-Garcia, I.Fita, S.Corbalan-Garcia, N.Verdaguer, J.C.Gomez-Fernandez. Structure of the C2 Domain From Novel Protein Kinase Cepsilon. A Membrane Binding Model For Ca(2+ )-Independent C2 Domains J.Mol.Biol. V. 311 837 2001.
ISSN: ISSN 0022-2836
PubMed: 11518534
DOI: 10.1006/JMBI.2001.4910
Page generated: Mon Dec 14 05:58:02 2020

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