Atomistry » Magnesium » PDB 1gq9-1h7q » 1h65
Atomistry »
  Magnesium »
    PDB 1gq9-1h7q »
      1h65 »

Magnesium in PDB 1h65: Crystal Structure of Pea TOC34 - A Novel Gtpase of the Chloroplast Protein Translocon

Protein crystallography data

The structure of Crystal Structure of Pea TOC34 - A Novel Gtpase of the Chloroplast Protein Translocon, PDB code: 1h65 was solved by Y.J.Sun, F.Forouhar, H.M.Li, S.L.Tu, S.Kao, H.L.Shr, C.C.Chou, C.D.Hsiao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.42 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 143.160, 78.673, 67.279, 90.00, 91.44, 90.00
R / Rfree (%) 18.6 / 23

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Pea TOC34 - A Novel Gtpase of the Chloroplast Protein Translocon (pdb code 1h65). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Pea TOC34 - A Novel Gtpase of the Chloroplast Protein Translocon, PDB code: 1h65:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 1h65

Go back to Magnesium Binding Sites List in 1h65
Magnesium binding site 1 out of 3 in the Crystal Structure of Pea TOC34 - A Novel Gtpase of the Chloroplast Protein Translocon


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Pea TOC34 - A Novel Gtpase of the Chloroplast Protein Translocon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg282

b:20.5
occ:1.00
O3B A:GDP281 2.1 11.3 1.0
O A:HOH2033 2.2 9.0 1.0
OG A:SER53 2.2 13.8 1.0
OE1 A:GLU73 2.2 25.8 1.0
O A:HOH2034 2.2 28.7 1.0
O A:HOH2200 2.2 10.2 1.0
CD A:GLU73 3.1 29.0 1.0
O2B A:GDP281 3.1 5.5 1.0
PB A:GDP281 3.2 12.5 1.0
CG A:GLU73 3.4 30.2 1.0
CB A:SER53 3.5 11.5 1.0
O1A A:GDP281 4.0 19.5 1.0
N A:SER53 4.0 9.6 1.0
CB A:GLU73 4.1 30.6 1.0
O1B A:GDP281 4.1 12.1 1.0
OE2 A:GLU73 4.2 32.4 1.0
O3A A:GDP281 4.2 10.8 1.0
NZ A:LYS52 4.3 7.5 1.0
O A:SER66 4.4 20.1 1.0
OD2 A:ASP93 4.4 18.1 1.0
CA A:SER53 4.4 9.9 1.0
O A:HOH2058 4.4 12.9 1.0
O A:HOH2049 4.5 36.4 1.0
PA A:GDP281 4.5 14.3 1.0
O A:THR94 4.5 14.6 1.0
OD1 A:ASP93 4.6 12.7 1.0
CE A:LYS52 4.6 10.5 1.0
O2A A:GDP281 4.6 21.1 1.0
CB A:LYS52 4.8 9.1 1.0
CG A:ASP93 4.9 15.8 1.0

Magnesium binding site 2 out of 3 in 1h65

Go back to Magnesium Binding Sites List in 1h65
Magnesium binding site 2 out of 3 in the Crystal Structure of Pea TOC34 - A Novel Gtpase of the Chloroplast Protein Translocon


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Pea TOC34 - A Novel Gtpase of the Chloroplast Protein Translocon within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg282

b:17.6
occ:1.00
O B:HOH2057 2.1 13.1 1.0
O B:HOH2069 2.2 12.6 1.0
O B:HOH2106 2.2 13.6 1.0
OE1 B:GLU73 2.2 13.9 1.0
O3B B:GDP281 2.2 9.7 1.0
OG B:SER53 2.2 16.7 1.0
CD B:GLU73 3.1 17.2 1.0
PB B:GDP281 3.4 10.9 1.0
CB B:SER53 3.5 16.9 1.0
CG B:GLU73 3.5 18.4 1.0
O2B B:GDP281 3.6 3.9 1.0
N B:SER53 4.0 11.3 1.0
CB B:GLU73 4.0 18.8 1.0
O B:SER66 4.1 19.0 1.0
O1B B:GDP281 4.2 10.5 1.0
OE2 B:GLU73 4.2 20.6 1.0
O B:HOH2088 4.2 16.5 1.0
O1A B:GDP281 4.3 18.0 1.0
O B:THR94 4.3 12.5 1.0
CA B:SER53 4.3 10.7 1.0
OD1 B:ASP93 4.3 8.5 1.0
NZ B:LYS52 4.3 6.3 1.0
O B:HOH2087 4.3 13.5 1.0
OD2 B:ASP93 4.4 12.0 1.0
O3A B:GDP281 4.5 9.2 1.0
CE B:LYS52 4.6 8.9 1.0
CB B:LYS52 4.7 6.4 1.0
O B:HOH2105 4.7 17.4 1.0
PA B:GDP281 4.8 12.8 1.0
CG B:ASP93 4.8 11.3 1.0
OG B:SER68 4.9 10.5 1.0
C B:LYS52 5.0 12.0 1.0

Magnesium binding site 3 out of 3 in 1h65

Go back to Magnesium Binding Sites List in 1h65
Magnesium binding site 3 out of 3 in the Crystal Structure of Pea TOC34 - A Novel Gtpase of the Chloroplast Protein Translocon


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Pea TOC34 - A Novel Gtpase of the Chloroplast Protein Translocon within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg282

b:10.9
occ:1.00
O C:HOH2097 2.0 8.6 1.0
O3B C:GDP281 2.1 11.4 1.0
O C:HOH2234 2.2 5.1 1.0
OG C:SER53 2.2 6.3 1.0
OE2 C:GLU73 2.2 13.5 1.0
O C:HOH2051 2.4 10.6 1.0
CD C:GLU73 3.2 14.2 1.0
CB C:SER53 3.3 8.8 1.0
PB C:GDP281 3.4 12.6 1.0
CG C:GLU73 3.5 12.6 1.0
O2B C:GDP281 3.6 5.6 1.0
N C:SER53 3.8 13.2 1.0
CA C:SER53 4.1 12.5 1.0
NZ C:LYS52 4.1 5.3 1.0
OD1 C:ASP93 4.2 13.5 1.0
O1A C:GDP281 4.2 19.6 1.0
O1B C:GDP281 4.2 12.2 1.0
O C:HOH2062 4.3 40.4 1.0
O C:SER66 4.3 12.2 1.0
OE1 C:GLU73 4.3 13.6 1.0
O3A C:GDP281 4.3 10.9 1.0
O C:THR94 4.4 11.5 1.0
OD2 C:ASP93 4.4 11.5 1.0
CE C:LYS52 4.4 6.4 1.0
O2A C:GDP281 4.5 21.2 1.0
O C:HOH2063 4.5 21.6 1.0
PA C:GDP281 4.5 14.4 1.0
CB C:LYS52 4.5 7.6 1.0
O C:HOH2077 4.5 9.3 1.0
CB C:GLU73 4.5 12.1 1.0
CG C:ASP93 4.7 11.7 1.0
O C:HOH2096 4.8 21.4 1.0
C C:LYS52 4.8 6.8 1.0

Reference:

Y.J.Sun, F.Forouhar, H.M.Li, S.L.Tu, Y.H.Yeh, S.Kao, H.L.Shr, C.C.Chou, C.Chen, C.D.Hsiao. Crystal Structure of Pea TOC34 - A Novel Gtpase of the Chloroplast Protein Translocon Nat.Struct.Biol. V. 9 95 2002.
ISSN: ISSN 1072-8368
PubMed: 11753431
DOI: 10.1038/NSB744
Page generated: Tue Aug 13 03:53:10 2024

Last articles

Na in 7Q78
Na in 7Q77
Na in 7Q76
Na in 7Q6Q
Na in 7Q75
Na in 7Q5F
Na in 7Q47
Na in 7Q3Z
Na in 7Q5E
Na in 7Q36
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy