Magnesium in PDB 1ini: Crystal Structure of 4-Diphosphocytidyl-2-C-Methylerythritol (Cdp-Me) Synthetase (Ygbp) Involved in Mevalonate Independent Isoprenoid Biosynthesis, Complexed with Cdp-Me and MG2+

The structure of Crystal Structure of 4-Diphosphocytidyl-2-C-Methylerythritol (Cdp-Me) Synthetase (Ygbp) Involved in Mevalonate Independent Isoprenoid Biosynthesis, Complexed with Cdp-Me and MG2+, PDB code: 1ini was solved by S.B.Richard, M.E.Bowman, W.Kwiatkowski, I.Kang, C.Chow, A.Lillo, D.E.Cane, J.P.Noel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.00 / 1.82
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	129.990, 46.764, 38.387, 90.00, 92.64, 90.00
R / Rfree (%)	22.2 / 27.3

The binding sites of Magnesium atom in the Crystal Structure of 4-Diphosphocytidyl-2-C-Methylerythritol (Cdp-Me) Synthetase (Ygbp) Involved in Mevalonate Independent Isoprenoid Biosynthesis, Complexed with Cdp-Me and MG2+ (pdb code 1ini). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of 4-Diphosphocytidyl-2-C-Methylerythritol (Cdp-Me) Synthetase (Ygbp) Involved in Mevalonate Independent Isoprenoid Biosynthesis, Complexed with Cdp-Me and MG2+, PDB code: 1ini:

Magnesium binding site 1 out of 1 in the Crystal Structure of 4-Diphosphocytidyl-2-C-Methylerythritol (Cdp-Me) Synthetase (Ygbp) Involved in Mevalonate Independent Isoprenoid Biosynthesis, Complexed with Cdp-Me and MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of 4-Diphosphocytidyl-2-C-Methylerythritol (Cdp-Me) Synthetase (Ygbp) Involved in Mevalonate Independent Isoprenoid Biosynthesis, Complexed with Cdp-Me and MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1002 b:64.0 occ:1.00 O2A A:CDM1001 2.7 41.3 1.0 O A:HOH1091 3.5 34.7 1.0 NH2 A:ARG20 3.5 67.7 1.0 O A:HOH1059 4.1 50.9 1.0 PA A:CDM1001 4.2 34.7 1.0 C5 A:CDM1001 4.2 37.5 1.0 O2B A:CDM1001 4.3 31.4 1.0 O1B A:CDM1001 4.3 38.9 1.0 C6 A:CDM1001 4.3 36.8 1.0 CZ A:ARG20 4.6 74.4 1.0 O3A A:CDM1001 4.6 36.6 1.0 O5' A:CDM1001 4.6 34.0 1.0 PB A:CDM1001 4.7 32.4 1.0

S.B.Richard, M.E.Bowman, W.Kwiatkowski, I.Kang, C.Chow, A.M.Lillo, D.E.Cane, J.P.Noel. Structure of 4-Diphosphocytidyl-2-C- Methylerythritol Synthetase Involved in Mevalonate- Independent Isoprenoid Biosynthesis. Nat.Struct.Biol. V. 8 641 2001.
ISSN: ISSN 1072-8368
PubMed: 11427897
DOI: 10.1038/89691