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Magnesium in PDB 1ir2: Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)

Enzymatic activity of Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)

All present enzymatic activity of Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp):
4.1.1.39;

Protein crystallography data

The structure of Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp), PDB code: 1ir2 was solved by E.Mizohata, H.Matsumura, Y.Okano, M.Kumei, H.Takuma, J.Onodera, K.Kato, N.Shibata, T.Inoue, A.Yokota, Y.Kai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.89 / 1.84
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 129.170, 174.750, 222.270, 90.00, 97.75, 90.00
R / Rfree (%) 15.2 / 18.1

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Magnesium atom in the Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp) (pdb code 1ir2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 16 binding sites of Magnesium where determined in the Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp), PDB code: 1ir2:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 16 in 1ir2

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Magnesium binding site 1 out of 16 in the Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg476

b:9.6
occ:1.00
 OD1 A:ASP203 2.0 10.5 1.0
OE1 A:GLU204 2.0 9.5 1.0
OQ1 A:KCX201 2.1 8.5 1.0
O6 A:CAP501 2.1 9.7 1.0
O3 A:CAP501 2.3 10.4 1.0
O2 A:CAP501 2.3 10.4 1.0
C2 A:CAP501 2.8 10.4 1.0
C A:CAP501 2.8 10.4 1.0
C3 A:CAP501 3.0 9.7 1.0
CD A:GLU204 3.1 10.7 1.0
CX A:KCX201 3.1 9.1 1.0
CG A:ASP203 3.2 9.3 1.0
OQ2 A:KCX201 3.3 8.6 1.0
OE2 A:GLU204 3.5 12.1 1.0
NZ A:LYS177 3.7 6.2 1.0
N A:GLU204 3.8 9.4 1.0
ND2 E:ASN123 3.9 8.9 1.0
OD2 A:ASP203 3.9 10.6 1.0
CG2 A:THR173 3.9 4.8 1.0
NZ A:LYS175 3.9 9.9 1.0
O7 A:CAP501 4.0 10.5 1.0
NE2 A:HIS294 4.0 8.2 1.0
CA A:ASP203 4.2 10.5 1.0
CB A:ASP203 4.2 8.7 1.0
C1 A:CAP501 4.3 8.3 1.0
C4 A:CAP501 4.3 10.8 1.0
OG1 A:THR173 4.3 7.9 1.0
CG A:GLU204 4.3 10.9 1.0
NZ A:KCX201 4.3 7.9 1.0
C A:ASP203 4.5 10.0 1.0
CB A:GLU204 4.5 9.5 1.0
CD2 A:HIS294 4.6 8.6 1.0
CB A:THR173 4.7 8.3 1.0
C5 A:CAP501 4.8 10.0 1.0
CA A:GLU204 4.8 9.7 1.0
O1 A:CAP501 4.8 10.7 1.0
CE1 A:HIS294 5.0 9.8 1.0

Magnesium binding site 2 out of 16 in 1ir2

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Magnesium binding site 2 out of 16 in the Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg476

b:11.4
occ:1.00
 OE1 B:GLU204 2.0 9.9 1.0
OD1 B:ASP203 2.1 10.8 1.0
OQ1 B:KCX201 2.1 7.7 1.0
O3 B:CAP501 2.2 14.2 1.0
O6 B:CAP501 2.2 17.1 1.0
O2 B:CAP501 2.3 12.6 1.0
C2 B:CAP501 2.8 13.9 1.0
C B:CAP501 2.8 15.3 1.0
C3 B:CAP501 3.0 13.1 1.0
CD B:GLU204 3.0 12.3 1.0
CX B:KCX201 3.2 9.8 1.0
CG B:ASP203 3.3 11.9 1.0
OQ2 B:KCX201 3.4 12.3 1.0
OE2 B:GLU204 3.4 11.7 1.0
NZ B:LYS177 3.6 11.4 1.0
N B:GLU204 3.8 9.4 1.0
ND2 F:ASN123 3.8 12.2 1.0
NE2 B:HIS294 4.0 10.5 1.0
CG2 B:THR173 4.0 8.4 1.0
NZ B:LYS175 4.0 9.2 1.0
OD2 B:ASP203 4.0 12.8 1.0
O7 B:CAP501 4.0 16.8 1.0
CA B:ASP203 4.2 9.5 1.0
C4 B:CAP501 4.2 14.0 1.0
CB B:ASP203 4.3 9.4 1.0
CG B:GLU204 4.3 10.7 1.0
C1 B:CAP501 4.3 12.3 1.0
NZ B:KCX201 4.4 10.8 1.0
OG1 B:THR173 4.5 10.9 1.0
CB B:GLU204 4.5 10.8 1.0
C B:ASP203 4.5 9.5 1.0
CD2 B:HIS294 4.6 11.0 1.0
C5 B:CAP501 4.7 10.7 1.0
CB B:THR173 4.8 10.5 1.0
CA B:GLU204 4.8 10.0 1.0
O1 B:CAP501 4.9 13.6 1.0
CE1 B:HIS294 4.9 8.3 1.0
CG F:ASN123 5.0 13.5 1.0
O F:HOH648 5.0 14.2 1.0

Magnesium binding site 3 out of 16 in 1ir2

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Magnesium binding site 3 out of 16 in the Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg476

b:13.1
occ:1.00
 OE1 C:GLU204 2.0 9.3 1.0
OD1 C:ASP203 2.0 11.4 1.0
OQ1 C:KCX201 2.2 8.5 1.0
O6 C:CAP501 2.2 10.7 1.0
O3 C:CAP501 2.2 11.1 1.0
O2 C:CAP501 2.3 10.1 1.0
C2 C:CAP501 2.8 9.6 1.0
C C:CAP501 2.8 10.1 1.0
CD C:GLU204 3.0 8.4 1.0
C3 C:CAP501 3.0 9.8 1.0
CG C:ASP203 3.2 10.1 1.0
CX C:KCX201 3.2 10.2 1.0
OE2 C:GLU204 3.5 9.8 1.0
OQ2 C:KCX201 3.5 9.1 1.0
NZ C:LYS177 3.6 9.1 1.0
ND2 G:ASN123 3.8 8.9 1.0
N C:GLU204 3.8 8.1 1.0
OD2 C:ASP203 3.9 11.2 1.0
NZ C:LYS175 4.0 8.3 1.0
NE2 C:HIS294 4.0 10.4 1.0
O7 C:CAP501 4.0 10.7 1.0
CG2 C:THR173 4.0 7.8 1.0
CA C:ASP203 4.2 9.2 1.0
CB C:ASP203 4.2 9.8 1.0
C4 C:CAP501 4.3 10.6 1.0
CG C:GLU204 4.3 7.4 1.0
C1 C:CAP501 4.3 10.4 1.0
NZ C:KCX201 4.4 8.5 1.0
OG1 C:THR173 4.4 11.3 1.0
C C:ASP203 4.5 9.3 1.0
CB C:GLU204 4.5 9.2 1.0
CD2 C:HIS294 4.5 8.3 1.0
C5 C:CAP501 4.7 10.0 1.0
CB C:THR173 4.8 10.3 1.0
CA C:GLU204 4.8 8.5 1.0
O G:HOH675 4.9 10.2 1.0
O1 C:CAP501 4.9 11.2 1.0
CE1 C:HIS294 5.0 10.2 1.0
CG G:ASN123 5.0 10.6 1.0

Magnesium binding site 4 out of 16 in 1ir2

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Magnesium binding site 4 out of 16 in the Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg476

b:9.4
occ:1.00
 OD1 D:ASP203 2.0 9.0 1.0
OE1 D:GLU204 2.0 8.8 1.0
OQ1 D:KCX201 2.1 7.5 1.0
O6 D:CAP501 2.2 6.9 1.0
O3 D:CAP501 2.2 8.4 1.0
O2 D:CAP501 2.3 8.4 1.0
C2 D:CAP501 2.8 7.5 1.0
C D:CAP501 2.8 7.7 1.0
C3 D:CAP501 3.0 9.2 1.0
CD D:GLU204 3.0 8.9 1.0
CX D:KCX201 3.1 8.6 1.0
CG D:ASP203 3.2 9.2 1.0
OQ2 D:KCX201 3.4 8.0 1.0
OE2 D:GLU204 3.5 9.6 1.0
NZ D:LYS177 3.7 7.6 1.0
N D:GLU204 3.8 8.6 1.0
ND2 H:ASN123 3.8 7.4 1.0
OD2 D:ASP203 3.9 10.0 1.0
NZ D:LYS175 3.9 7.9 1.0
CG2 D:THR173 4.0 6.1 1.0
NE2 D:HIS294 4.0 6.8 1.0
O7 D:CAP501 4.0 8.0 1.0
CA D:ASP203 4.2 8.8 1.0
CB D:ASP203 4.2 7.1 1.0
C4 D:CAP501 4.2 9.6 1.0
C1 D:CAP501 4.3 7.0 1.0
NZ D:KCX201 4.3 6.8 1.0
CG D:GLU204 4.3 6.7 1.0
OG1 D:THR173 4.4 7.7 1.0
C D:ASP203 4.5 9.1 1.0
CB D:GLU204 4.5 7.3 1.0
CD2 D:HIS294 4.6 5.7 1.0
CB D:THR173 4.7 6.4 1.0
C5 D:CAP501 4.7 9.8 1.0
CA D:GLU204 4.8 8.4 1.0
O1 D:CAP501 4.8 9.7 1.0
O H:HOH621 4.9 7.7 1.0
CE1 D:HIS294 4.9 6.7 1.0
CG H:ASN123 5.0 7.6 1.0

Magnesium binding site 5 out of 16 in 1ir2

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Magnesium binding site 5 out of 16 in the Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg476

b:11.1
occ:1.00
 OD1 E:ASP203 2.0 12.2 1.0
OE1 E:GLU204 2.1 10.7 1.0
OQ1 E:KCX201 2.1 11.2 1.0
O6 E:CAP501 2.2 9.8 1.0
O3 E:CAP501 2.2 10.9 1.0
O2 E:CAP501 2.2 11.8 1.0
C2 E:CAP501 2.8 11.4 1.0
C E:CAP501 2.8 11.5 1.0
C3 E:CAP501 3.0 10.8 1.0
CX E:KCX201 3.1 10.8 1.0
CD E:GLU204 3.2 11.8 1.0
CG E:ASP203 3.2 12.5 1.0
OQ2 E:KCX201 3.3 10.3 1.0
OE2 E:GLU204 3.6 11.3 1.0
NZ E:LYS177 3.7 6.9 1.0
N E:GLU204 3.8 10.0 1.0
OD2 E:ASP203 3.9 13.5 1.0
CG2 E:THR173 3.9 3.4 1.0
ND2 A:ASN123 4.0 9.8 1.0
NZ E:LYS175 4.0 8.6 1.0
O7 E:CAP501 4.0 11.6 1.0
NE2 E:HIS294 4.0 9.8 1.0
CA E:ASP203 4.1 9.9 1.0
CB E:ASP203 4.2 10.0 1.0
C1 E:CAP501 4.2 11.0 1.0
C4 E:CAP501 4.3 11.1 1.0
NZ E:KCX201 4.3 8.3 1.0
OG1 E:THR173 4.4 10.1 1.0
CG E:GLU204 4.4 10.5 1.0
C E:ASP203 4.5 11.1 1.0
CB E:GLU204 4.6 10.7 1.0
CD2 E:HIS294 4.6 7.4 1.0
CB E:THR173 4.7 9.0 1.0
C5 E:CAP501 4.7 11.1 1.0
CA E:GLU204 4.8 10.2 1.0
O1 E:CAP501 4.8 11.7 1.0
CE1 E:HIS294 4.9 9.3 1.0
O A:HOH779 5.0 12.7 1.0

Magnesium binding site 6 out of 16 in 1ir2

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Magnesium binding site 6 out of 16 in the Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg476

b:11.7
occ:1.00
 OE1 F:GLU204 2.1 8.4 1.0
OD1 F:ASP203 2.1 10.6 1.0
OQ1 F:KCX201 2.1 8.6 1.0
O3 F:CAP501 2.2 10.9 1.0
O6 F:CAP501 2.3 15.2 1.0
O2 F:CAP501 2.3 10.3 1.0
C2 F:CAP501 2.8 13.0 1.0
C F:CAP501 2.9 13.7 1.0
C3 F:CAP501 3.0 11.7 1.0
CD F:GLU204 3.1 9.2 1.0
CX F:KCX201 3.1 10.1 1.0
CG F:ASP203 3.2 9.5 1.0
OQ2 F:KCX201 3.3 10.6 1.0
OE2 F:GLU204 3.5 10.6 1.0
NZ F:LYS177 3.7 7.5 1.0
N F:GLU204 3.8 10.2 1.0
ND2 B:ASN123 3.9 11.6 1.0
CG2 F:THR173 3.9 10.1 1.0
OD2 F:ASP203 3.9 11.3 1.0
NE2 F:HIS294 3.9 10.6 1.0
NZ F:LYS175 3.9 8.7 1.0
O7 F:CAP501 4.1 12.6 1.0
CA F:ASP203 4.2 9.4 1.0
CB F:ASP203 4.3 9.3 1.0
C4 F:CAP501 4.3 11.6 1.0
NZ F:KCX201 4.3 8.8 1.0
C1 F:CAP501 4.3 11.2 1.0
OG1 F:THR173 4.3 12.5 1.0
CG F:GLU204 4.3 9.3 1.0
C F:ASP203 4.5 9.5 1.0
CD2 F:HIS294 4.5 8.3 1.0
CB F:GLU204 4.5 8.3 1.0
CB F:THR173 4.7 10.0 1.0
C5 F:CAP501 4.7 12.9 1.0
CA F:GLU204 4.8 9.4 1.0
O1 F:CAP501 4.8 13.0 1.0
CE1 F:HIS294 4.9 8.3 1.0

Magnesium binding site 7 out of 16 in 1ir2

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Magnesium binding site 7 out of 16 in the Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg476

b:11.5
occ:1.00
 OE1 G:GLU204 2.0 7.9 1.0
OD1 G:ASP203 2.0 8.9 1.0
OQ1 G:KCX201 2.1 8.9 1.0
O6 G:CAP501 2.2 6.8 1.0
O3 G:CAP501 2.2 9.2 1.0
O2 G:CAP501 2.3 7.7 1.0
C2 G:CAP501 2.8 7.5 1.0
C G:CAP501 2.9 8.8 1.0
C3 G:CAP501 3.0 8.3 1.0
CD G:GLU204 3.0 9.0 1.0
CX G:KCX201 3.1 8.8 1.0
CG G:ASP203 3.2 9.9 1.0
OQ2 G:KCX201 3.4 7.4 1.0
OE2 G:GLU204 3.5 7.8 1.0
NZ G:LYS177 3.7 6.9 1.0
N G:GLU204 3.7 6.6 1.0
OD2 G:ASP203 3.9 11.1 1.0
ND2 C:ASN123 3.9 10.2 1.0
NZ G:LYS175 3.9 9.0 1.0
CG2 G:THR173 4.0 4.8 1.0
NE2 G:HIS294 4.0 6.0 1.0
O7 G:CAP501 4.0 7.4 1.0
CA G:ASP203 4.1 7.3 1.0
CB G:ASP203 4.2 7.6 1.0
C4 G:CAP501 4.3 10.2 1.0
CG G:GLU204 4.3 7.2 1.0
C1 G:CAP501 4.3 7.3 1.0
NZ G:KCX201 4.3 8.1 1.0
OG1 G:THR173 4.3 7.3 1.0
C G:ASP203 4.5 7.5 1.0
CB G:GLU204 4.5 7.3 1.0
CD2 G:HIS294 4.7 5.7 1.0
CB G:THR173 4.7 7.1 1.0
C5 G:CAP501 4.7 8.4 1.0
CA G:GLU204 4.7 7.6 1.0
O1 G:CAP501 4.9 9.0 1.0
O C:HOH621 4.9 8.5 1.0
CE1 G:HIS294 4.9 7.1 1.0

Magnesium binding site 8 out of 16 in 1ir2

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Magnesium binding site 8 out of 16 in the Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg476

b:10.8
occ:1.00
 OE1 H:GLU204 2.0 7.9 1.0
OD1 H:ASP203 2.1 10.1 1.0
O3 H:CAP501 2.1 7.0 1.0
O6 H:CAP501 2.1 9.4 1.0
OQ1 H:KCX201 2.2 7.1 1.0
O2 H:CAP501 2.3 8.1 1.0
C2 H:CAP501 2.7 7.4 1.0
C H:CAP501 2.8 8.2 1.0
C3 H:CAP501 2.9 8.5 1.0
CD H:GLU204 3.1 8.1 1.0
CX H:KCX201 3.1 7.2 1.0
CG H:ASP203 3.3 10.1 1.0
OQ2 H:KCX201 3.3 9.9 1.0
OE2 H:GLU204 3.5 8.3 1.0
ND2 D:ASN123 3.7 7.9 1.0
NZ H:LYS177 3.8 5.0 1.0
N H:GLU204 3.8 5.9 1.0
NZ H:LYS175 3.9 6.3 1.0
NE2 H:HIS294 3.9 8.8 1.0
O7 H:CAP501 4.0 9.0 1.0
OD2 H:ASP203 4.0 8.8 1.0
CG2 H:THR173 4.0 5.8 1.0
C4 H:CAP501 4.2 9.6 1.0
CA H:ASP203 4.2 6.8 1.0
C1 H:CAP501 4.2 7.2 1.0
CB H:ASP203 4.3 6.9 1.0
CG H:GLU204 4.3 7.9 1.0
OG1 H:THR173 4.3 7.6 1.0
NZ H:KCX201 4.4 7.4 1.0
CB H:GLU204 4.5 7.0 1.0
C H:ASP203 4.5 7.6 1.0
CD2 H:HIS294 4.6 6.4 1.0
C5 H:CAP501 4.6 9.3 1.0
CB H:THR173 4.7 7.8 1.0
CA H:GLU204 4.8 7.3 1.0
O1 H:CAP501 4.8 8.6 1.0
CE1 H:HIS294 4.9 7.1 1.0
CG D:ASN123 4.9 8.6 1.0
O D:HOH659 4.9 8.3 1.0

Magnesium binding site 9 out of 16 in 1ir2

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Magnesium binding site 9 out of 16 in the Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp) within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Mg476

b:11.9
occ:1.00
 OD1 S:ASP203 2.0 9.8 1.0
OE1 S:GLU204 2.0 6.2 1.0
OQ1 S:KCX201 2.1 8.6 1.0
O3 S:CAP501 2.2 12.3 1.0
O6 S:CAP501 2.2 11.6 1.0
O2 S:CAP501 2.3 12.9 1.0
C2 S:CAP501 2.8 12.3 1.0
C S:CAP501 2.8 12.5 1.0
C3 S:CAP501 3.0 12.7 1.0
CD S:GLU204 3.0 8.1 1.0
CX S:KCX201 3.1 11.4 1.0
CG S:ASP203 3.2 9.8 1.0
OQ2 S:KCX201 3.3 8.7 1.0
OE2 S:GLU204 3.4 10.1 1.0
NZ S:LYS177 3.7 7.2 1.0
ND2 W:ASN123 3.8 9.8 1.0
N S:GLU204 3.8 7.3 1.0
OD2 S:ASP203 3.9 8.9 1.0
NE2 S:HIS294 4.0 9.0 1.0
NZ S:LYS175 4.0 11.3 1.0
CG2 S:THR173 4.0 8.2 1.0
O7 S:CAP501 4.0 11.5 1.0
CA S:ASP203 4.2 7.6 1.0
CB S:ASP203 4.2 8.4 1.0
C1 S:CAP501 4.3 11.5 1.0
C4 S:CAP501 4.3 11.5 1.0
CG S:GLU204 4.3 6.9 1.0
NZ S:KCX201 4.3 8.1 1.0
OG1 S:THR173 4.4 8.0 1.0
C S:ASP203 4.5 8.7 1.0
CB S:GLU204 4.5 6.5 1.0
CD2 S:HIS294 4.6 9.1 1.0
CB S:THR173 4.7 9.3 1.0
C5 S:CAP501 4.7 10.8 1.0
CA S:GLU204 4.8 7.2 1.0
O1 S:CAP501 4.8 12.4 1.0
O W:HOH629 4.9 8.7 1.0
CE1 S:HIS294 4.9 8.0 1.0
CG W:ASN123 5.0 10.1 1.0

Magnesium binding site 10 out of 16 in 1ir2

Go back to Magnesium Binding Sites List in 1ir2
Magnesium binding site 10 out of 16 in the Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Green Alga, Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp) within 5.0Å range:
probe atom residue distance (Å) B Occ
T:Mg476

b:12.4
occ:1.00
 OE1 T:GLU204 2.0 8.1 1.0
OD1 T:ASP203 2.1 10.2 1.0
OQ1 T:KCX201 2.1 9.6 1.0
O6 T:CAP501 2.2 11.8 1.0
O3 T:CAP501 2.2 10.2 1.0
O2 T:CAP501 2.3 12.5 1.0
C2 T:CAP501 2.8 10.4 1.0
C T:CAP501 2.8 11.8 1.0
C3 T:CAP501 3.0 11.0 1.0
CX T:KCX201 3.1 8.9 1.0
CD T:GLU204 3.1 7.8 1.0
CG T:ASP203 3.2 11.1 1.0
OQ2 T:KCX201 3.3 7.8 1.0
OE2 T:GLU204 3.6 11.0 1.0
NZ T:LYS177 3.8 9.7 1.0
N T:GLU204 3.8 9.7 1.0
ND2 X:ASN123 3.9 10.3 1.0
CG2 T:THR173 3.9 8.0 1.0
OD2 T:ASP203 3.9 9.1 1.0
NZ T:LYS175 4.0 8.5 1.0
O7 T:CAP501 4.0 10.6 1.0
NE2 T:HIS294 4.0 9.1 1.0
CA T:ASP203 4.2 10.0 1.0
C1 T:CAP501 4.2 10.6 1.0
CB T:ASP203 4.3 9.9 1.0
C4 T:CAP501 4.3 9.9 1.0
NZ T:KCX201 4.3 9.6 1.0
OG1 T:THR173 4.4 10.9 1.0
CG T:GLU204 4.4 8.3 1.0
C T:ASP203 4.5 11.1 1.0
CB T:GLU204 4.6 8.3 1.0
CD2 T:HIS294 4.6 8.8 1.0
CB T:THR173 4.7 10.6 1.0
C5 T:CAP501 4.7 10.0 1.0
CA T:GLU204 4.8 9.4 1.0
O1 T:CAP501 4.8 11.3 1.0
CE1 T:HIS294 4.9 10.1 1.0

Reference:

E.Mizohata, H.Matsumura, Y.Okano, M.Kumei, H.Takuma, J.Onodera, K.Kato, N.Shibata, T.Inoue, A.Yokota, Y.Kai. Crystal Structure of Activated Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Green Alga Chlamydomonas Reinhardtii Complexed with 2-Carboxyarabinitol-1,5-Bisphosphate. J.Mol.Biol. V. 316 679 2002.
ISSN: ISSN 0022-2836
PubMed: 11866526
DOI: 10.1006/JMBI.2001.5381
Page generated: Tue Aug 13 05:08:56 2024

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