Magnesium in PDB 1iwl: Crystal Structure of the Lipoprotein Localization Factor, Lola

The structure of Crystal Structure of the Lipoprotein Localization Factor, Lola, PDB code: 1iwl was solved by K.Takeda, H.Miyatake, N.Yokota, S.Matsuyama, H.Tokuda, K.Miki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 1.65
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	55.760, 75.370, 99.500, 90.00, 90.00, 90.00
R / Rfree (%)	22.2 / 24.9

The structure of Crystal Structure of the Lipoprotein Localization Factor, Lola also contains other interesting chemical elements:

Zinc

(Zn)

3 atoms

The binding sites of Magnesium atom in the Crystal Structure of the Lipoprotein Localization Factor, Lola (pdb code 1iwl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Lipoprotein Localization Factor, Lola, PDB code: 1iwl:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the Lipoprotein Localization Factor, Lola


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Lipoprotein Localization Factor, Lola within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg194 b:33.6 occ:1.00 ND1 A:HIS138 1.9 27.3 1.0 O A:HOH327 2.0 36.2 1.0 CE1 A:HIS138 2.8 23.8 1.0 CG A:HIS138 2.8 24.7 1.0 CB A:HIS138 3.3 22.7 1.0 NE2 A:HIS138 3.9 27.6 1.0 CD2 A:HIS138 3.9 26.7 1.0 CA A:HIS138 4.0 15.9 1.0 O A:HOH249 4.0 36.0 1.0 O A:HIS138 4.8 16.2 1.0 C A:HIS138 4.8 16.6 1.0 OE1 A:GLN153 4.9 37.7 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the Lipoprotein Localization Factor, Lola


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Lipoprotein Localization Factor, Lola within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg195 b:47.2 occ:1.00 OD2 A:ASP38 2.0 41.5 1.0 CE1 A:HIS17 2.0 27.3 1.0 NE2 A:HIS17 2.1 30.3 1.0 O A:HOH357 2.3 46.2 1.0 CG A:ASP38 3.0 33.9 1.0 OD1 A:ASP38 3.3 33.1 1.0 ND1 A:HIS17 3.3 32.1 1.0 CZ2 A:TRP40 3.5 23.7 1.0 O A:HOH356 3.5 39.6 1.0 CD2 A:HIS17 3.5 25.1 1.0 ZN A:ZN192 3.9 42.8 1.0 CG A:HIS17 4.1 26.6 1.0 CH2 A:TRP40 4.2 27.8 1.0 CE2 A:TRP40 4.2 18.5 1.0 CB A:ASP38 4.3 21.3 1.0 NE1 A:TRP40 4.4 20.6 1.0 CB A:SER19 4.7 22.8 1.0 OG A:SER19 4.9 33.3 1.0

K.Takeda, H.Miyatake, N.Yokota, S.Matsuyama, H.Tokuda, K.Miki. Crystal Structures of Bacterial Lipoprotein Localization Factors, Lola and Lolb Embo J. V. 22 3199 2003.
ISSN: ISSN 0261-4189
PubMed: 12839983
DOI: 10.1093/EMBOJ/CDG324