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Magnesium in PDB 1j3n: Crystal Structure of 3-Oxoacyl-(Acyl-Carrier Protein) Synthase II From Thermus Thermophilus HB8

Enzymatic activity of Crystal Structure of 3-Oxoacyl-(Acyl-Carrier Protein) Synthase II From Thermus Thermophilus HB8

All present enzymatic activity of Crystal Structure of 3-Oxoacyl-(Acyl-Carrier Protein) Synthase II From Thermus Thermophilus HB8:
2.3.1.41;

Protein crystallography data

The structure of Crystal Structure of 3-Oxoacyl-(Acyl-Carrier Protein) Synthase II From Thermus Thermophilus HB8, PDB code: 1j3n was solved by B.Bagautdinov, M.Miyano, T.H.Tahirov, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.00
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 72.067, 185.573, 62.517, 90.00, 90.00, 90.00
R / Rfree (%) 21 / 25.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of 3-Oxoacyl-(Acyl-Carrier Protein) Synthase II From Thermus Thermophilus HB8 (pdb code 1j3n). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of 3-Oxoacyl-(Acyl-Carrier Protein) Synthase II From Thermus Thermophilus HB8, PDB code: 1j3n:

Magnesium binding site 1 out of 1 in 1j3n

Go back to Magnesium Binding Sites List in 1j3n
Magnesium binding site 1 out of 1 in the Crystal Structure of 3-Oxoacyl-(Acyl-Carrier Protein) Synthase II From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of 3-Oxoacyl-(Acyl-Carrier Protein) Synthase II From Thermus Thermophilus HB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg501

b:36.5
occ:1.00
 O B:HOH723 2.5 35.1 1.0
O B:THR208 2.5 25.0 1.0
OG1 B:THR208 2.5 21.2 1.0
O B:HOH726 2.8 40.3 1.0
C B:THR208 3.0 24.4 1.0
CB B:THR208 3.3 24.0 1.0
N B:ARG209 3.7 26.9 1.0
CA B:THR208 3.7 24.9 1.0
CA B:ARG209 3.9 25.8 1.0
O B:HOH533 4.3 25.1 1.0
OE1 B:GLU211 4.4 36.4 1.0
N B:THR208 4.5 24.8 1.0
O B:HOH720 4.5 29.9 1.0
O B:HOH716 4.5 36.0 1.0
OD2 B:ASP225 4.7 27.4 1.0
CG2 B:THR208 4.7 22.9 1.0
N B:ASN210 4.8 24.8 1.0
CB B:ARG209 5.0 28.2 1.0
C B:ARG209 5.0 25.9 1.0

Reference:

B.Bagautdinov, Y.Ukita, M.Miyano, N.Kunishima. Structure of 3-Oxoacyl-(Acyl-Carrier Protein) Synthase II From Thermus Thermophilus HB8. Acta Crystallogr.,Sect.F V. 64 358 2008.
ISSN: ESSN 1744-3091
PubMed: 18453702
DOI: 10.1107/S1744309108010336
Page generated: Tue Aug 13 05:45:04 2024

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