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Magnesium in PDB 1jax: Structure of Coenzyme F420H2:Nadp+ Oxidoreductase (Fno)

Protein crystallography data

The structure of Structure of Coenzyme F420H2:Nadp+ Oxidoreductase (Fno), PDB code: 1jax was solved by E.Warkentin, B.Mamat, R.Thauer, U.Ermler, S.Shima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.86 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 38.640, 72.140, 70.400, 90.00, 90.12, 90.00
R / Rfree (%) 18.5 / 22.1

Other elements in 1jax:

The structure of Structure of Coenzyme F420H2:Nadp+ Oxidoreductase (Fno) also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Coenzyme F420H2:Nadp+ Oxidoreductase (Fno) (pdb code 1jax). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Coenzyme F420H2:Nadp+ Oxidoreductase (Fno), PDB code: 1jax:

Magnesium binding site 1 out of 1 in 1jax

Go back to Magnesium Binding Sites List in 1jax
Magnesium binding site 1 out of 1 in the Structure of Coenzyme F420H2:Nadp+ Oxidoreductase (Fno)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Coenzyme F420H2:Nadp+ Oxidoreductase (Fno) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg216

b:30.8
occ:1.00
O A:HOH352 2.1 30.5 1.0
O A:HOH312 2.2 31.4 1.0
O A:HOH353 2.2 30.6 1.0
O A:HOH351 2.2 31.6 1.0
O A:HOH320 2.3 43.4 1.0
OD2 A:ASP172 4.2 11.6 0.5
OD1 A:ASP172 4.3 9.2 0.5
O A:HOH345 4.4 30.9 1.0
O A:HOH270 4.5 20.4 1.0
CG A:ASP172 4.7 11.5 0.5

Reference:

E.Warkentin, B.Mamat, M.Sordel-Klippert, M.Wicke, R.K.Thauer, M.Iwata, S.Iwata, U.Ermler, S.Shima. Structures of F420H2:Nadp+ Oxidoreductase with and Without Its Substrates Bound. Embo J. V. 20 6561 2001.
ISSN: ISSN 0261-4189
PubMed: 11726492
DOI: 10.1093/EMBOJ/20.23.6561
Page generated: Tue Aug 13 05:47:36 2024

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