Magnesium in PDB 1jb0: Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria
Protein crystallography data
The structure of Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria, PDB code: 1jb0
was solved by
P.Jordan,
P.Fromme,
H.T.Witt,
O.Klukas,
W.Saenger,
N.Krauss,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.00 /
2.50
|
Space group
|
P 63
|
Cell size a, b, c (Å), α, β, γ (°)
|
281.000,
281.000,
165.200,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
19.9 /
21.7
|
Other elements in 1jb0:
The structure of Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
96;
Binding sites:
The binding sites of Magnesium atom in the Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria
(pdb code 1jb0). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 96 binding sites of Magnesium where determined in the
Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria, PDB code: 1jb0:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 96 in 1jb0
Go back to
Magnesium Binding Sites List in 1jb0
Magnesium binding site 1 out
of 96 in the Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1011
b:29.5
occ:1.00
|
MG
|
A:CLA1011
|
0.0
|
29.5
|
1.0
|
ND
|
A:CLA1011
|
2.0
|
30.1
|
1.0
|
NB
|
A:CLA1011
|
2.1
|
27.4
|
1.0
|
NC
|
A:CLA1011
|
2.1
|
28.1
|
1.0
|
NA
|
A:CLA1011
|
2.2
|
28.4
|
1.0
|
NE2
|
A:HIS680
|
2.3
|
32.0
|
1.0
|
C4D
|
A:CLA1011
|
3.0
|
31.0
|
1.0
|
C1D
|
A:CLA1011
|
3.1
|
30.0
|
1.0
|
C1B
|
A:CLA1011
|
3.1
|
26.4
|
1.0
|
C4A
|
A:CLA1011
|
3.1
|
27.6
|
1.0
|
C4C
|
A:CLA1011
|
3.1
|
27.9
|
1.0
|
C1C
|
A:CLA1011
|
3.1
|
28.4
|
1.0
|
C4B
|
A:CLA1011
|
3.1
|
28.3
|
1.0
|
CD2
|
A:HIS680
|
3.2
|
31.9
|
1.0
|
C1A
|
A:CLA1011
|
3.2
|
30.4
|
1.0
|
CE1
|
A:HIS680
|
3.2
|
32.0
|
1.0
|
CHB
|
A:CLA1011
|
3.4
|
26.0
|
1.0
|
CHD
|
A:CLA1011
|
3.4
|
27.8
|
1.0
|
CHC
|
A:CLA1011
|
3.5
|
28.3
|
1.0
|
CHA
|
A:CLA1011
|
3.6
|
31.2
|
1.0
|
CAB
|
B:CLA1021
|
4.0
|
25.4
|
1.0
|
C3B
|
B:CLA1021
|
4.1
|
27.4
|
1.0
|
C3D
|
A:CLA1011
|
4.2
|
29.8
|
1.0
|
C2D
|
A:CLA1011
|
4.3
|
30.3
|
1.0
|
C4B
|
B:CLA1021
|
4.3
|
30.1
|
1.0
|
CHC
|
B:CLA1021
|
4.3
|
29.1
|
1.0
|
C2B
|
A:CLA1011
|
4.3
|
27.8
|
1.0
|
C3C
|
A:CLA1011
|
4.4
|
28.5
|
1.0
|
ND1
|
A:HIS680
|
4.4
|
34.0
|
1.0
|
C2C
|
A:CLA1011
|
4.4
|
26.9
|
1.0
|
C3B
|
A:CLA1011
|
4.4
|
25.2
|
1.0
|
CG
|
A:HIS680
|
4.4
|
32.3
|
1.0
|
C3A
|
A:CLA1011
|
4.4
|
29.3
|
1.0
|
C2A
|
A:CLA1011
|
4.5
|
31.1
|
1.0
|
CBD
|
A:CLA1011
|
4.8
|
33.7
|
1.0
|
C2B
|
B:CLA1021
|
4.8
|
27.1
|
1.0
|
CMA
|
A:CLA1011
|
4.9
|
27.8
|
1.0
|
NB
|
B:CLA1021
|
5.0
|
28.2
|
1.0
|
CBB
|
B:CLA1021
|
5.0
|
28.3
|
1.0
|
|
Magnesium binding site 2 out
of 96 in 1jb0
Go back to
Magnesium Binding Sites List in 1jb0
Magnesium binding site 2 out
of 96 in the Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1022
b:24.8
occ:1.00
|
MG
|
A:CLA1022
|
0.0
|
24.8
|
1.0
|
ND
|
A:CLA1022
|
2.0
|
24.6
|
1.0
|
O
|
A:HOH5005
|
2.1
|
22.0
|
1.0
|
NB
|
A:CLA1022
|
2.1
|
26.4
|
1.0
|
NC
|
A:CLA1022
|
2.1
|
26.6
|
1.0
|
NA
|
A:CLA1022
|
2.2
|
25.2
|
1.0
|
C4D
|
A:CLA1022
|
2.9
|
23.8
|
1.0
|
C1D
|
A:CLA1022
|
3.1
|
24.4
|
1.0
|
C1B
|
A:CLA1022
|
3.1
|
26.1
|
1.0
|
C4A
|
A:CLA1022
|
3.1
|
26.1
|
1.0
|
C4C
|
A:CLA1022
|
3.1
|
25.2
|
1.0
|
C1C
|
A:CLA1022
|
3.1
|
25.9
|
1.0
|
C4B
|
A:CLA1022
|
3.2
|
26.7
|
1.0
|
C1A
|
A:CLA1022
|
3.2
|
24.5
|
1.0
|
CHB
|
A:CLA1022
|
3.4
|
24.9
|
1.0
|
CHA
|
A:CLA1022
|
3.5
|
23.5
|
1.0
|
CHD
|
A:CLA1022
|
3.5
|
24.2
|
1.0
|
CHC
|
A:CLA1022
|
3.5
|
25.8
|
1.0
|
CBB
|
B:CLA1023
|
4.0
|
33.5
|
1.0
|
CAB
|
B:CLA1023
|
4.0
|
31.1
|
1.0
|
C3D
|
A:CLA1022
|
4.2
|
23.8
|
1.0
|
OD1
|
A:ASN604
|
4.2
|
27.3
|
1.0
|
C2D
|
A:CLA1022
|
4.2
|
23.5
|
1.0
|
C2B
|
A:CLA1022
|
4.3
|
25.5
|
1.0
|
C3C
|
A:CLA1022
|
4.3
|
24.3
|
1.0
|
C2C
|
A:CLA1022
|
4.3
|
26.4
|
1.0
|
C3B
|
A:CLA1022
|
4.4
|
27.6
|
1.0
|
C3A
|
A:CLA1022
|
4.4
|
25.9
|
1.0
|
C2
|
A:CLA1011
|
4.4
|
27.5
|
1.0
|
C2A
|
A:CLA1022
|
4.5
|
24.4
|
1.0
|
C20
|
A:CLA1011
|
4.5
|
24.9
|
1.0
|
C3
|
A:CLA1011
|
4.7
|
26.6
|
1.0
|
CB
|
B:ALA664
|
4.8
|
23.1
|
1.0
|
C1
|
A:CLA1011
|
4.9
|
32.0
|
1.0
|
CBD
|
A:CLA1022
|
4.9
|
24.9
|
1.0
|
|
Magnesium binding site 3 out
of 96 in 1jb0
Go back to
Magnesium Binding Sites List in 1jb0
Magnesium binding site 3 out
of 96 in the Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1013
b:40.1
occ:1.00
|
MG
|
A:CLA1013
|
0.0
|
40.1
|
1.0
|
ND
|
A:CLA1013
|
2.0
|
41.9
|
1.0
|
NC
|
A:CLA1013
|
2.1
|
40.1
|
1.0
|
NB
|
A:CLA1013
|
2.1
|
41.4
|
1.0
|
NA
|
A:CLA1013
|
2.2
|
41.5
|
1.0
|
SD
|
A:MET688
|
2.6
|
34.1
|
1.0
|
C4D
|
A:CLA1013
|
3.0
|
41.1
|
1.0
|
C1D
|
A:CLA1013
|
3.1
|
41.3
|
1.0
|
C4A
|
A:CLA1013
|
3.1
|
42.0
|
1.0
|
C4C
|
A:CLA1013
|
3.1
|
39.0
|
1.0
|
C1B
|
A:CLA1013
|
3.1
|
40.8
|
1.0
|
C1C
|
A:CLA1013
|
3.1
|
40.1
|
1.0
|
C4B
|
A:CLA1013
|
3.2
|
41.5
|
1.0
|
C1A
|
A:CLA1013
|
3.2
|
41.1
|
1.0
|
CHB
|
A:CLA1013
|
3.4
|
41.6
|
1.0
|
CHD
|
A:CLA1013
|
3.4
|
40.4
|
1.0
|
CHA
|
A:CLA1013
|
3.5
|
40.5
|
1.0
|
CG
|
A:MET688
|
3.5
|
32.8
|
1.0
|
CHC
|
A:CLA1013
|
3.5
|
40.8
|
1.0
|
NE1
|
B:TRP588
|
3.7
|
28.7
|
1.0
|
CB
|
A:MET688
|
3.9
|
34.2
|
1.0
|
CE
|
A:MET688
|
4.0
|
31.0
|
1.0
|
C3D
|
A:CLA1013
|
4.2
|
40.3
|
1.0
|
C2D
|
A:CLA1013
|
4.3
|
41.2
|
1.0
|
C2C
|
A:CLA1013
|
4.3
|
39.0
|
1.0
|
C3C
|
A:CLA1013
|
4.3
|
37.5
|
1.0
|
CZ2
|
B:TRP588
|
4.4
|
29.3
|
1.0
|
C2B
|
A:CLA1013
|
4.4
|
41.6
|
1.0
|
C3A
|
A:CLA1013
|
4.4
|
41.4
|
1.0
|
C3B
|
A:CLA1013
|
4.4
|
41.4
|
1.0
|
CE2
|
B:TRP588
|
4.4
|
29.7
|
1.0
|
C2A
|
A:CLA1013
|
4.5
|
42.0
|
1.0
|
CH2
|
A:TRP697
|
4.8
|
34.7
|
1.0
|
CD1
|
B:TRP588
|
4.9
|
29.8
|
1.0
|
CBD
|
A:CLA1013
|
5.0
|
39.8
|
1.0
|
|
Magnesium binding site 4 out
of 96 in 1jb0
Go back to
Magnesium Binding Sites List in 1jb0
Magnesium binding site 4 out
of 96 in the Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1101
b:47.6
occ:1.00
|
MG
|
A:CLA1101
|
0.0
|
47.6
|
1.0
|
ND
|
A:CLA1101
|
2.0
|
46.7
|
1.0
|
NB
|
A:CLA1101
|
2.1
|
46.7
|
1.0
|
NC
|
A:CLA1101
|
2.1
|
46.0
|
1.0
|
NA
|
A:CLA1101
|
2.2
|
47.3
|
1.0
|
NE2
|
A:HIS52
|
2.4
|
43.9
|
1.0
|
C4D
|
A:CLA1101
|
3.0
|
48.6
|
1.0
|
C1B
|
A:CLA1101
|
3.1
|
47.7
|
1.0
|
C1D
|
A:CLA1101
|
3.1
|
46.9
|
1.0
|
C1C
|
A:CLA1101
|
3.1
|
46.1
|
1.0
|
C4C
|
A:CLA1101
|
3.1
|
46.6
|
1.0
|
C4A
|
A:CLA1101
|
3.1
|
48.6
|
1.0
|
C4B
|
A:CLA1101
|
3.1
|
47.5
|
1.0
|
C1A
|
A:CLA1101
|
3.2
|
49.3
|
1.0
|
CE1
|
A:HIS52
|
3.3
|
43.0
|
1.0
|
CHB
|
A:CLA1101
|
3.4
|
47.7
|
1.0
|
CD2
|
A:HIS52
|
3.4
|
42.0
|
1.0
|
CHD
|
A:CLA1101
|
3.5
|
46.5
|
1.0
|
CHC
|
A:CLA1101
|
3.5
|
46.7
|
1.0
|
CHA
|
A:CLA1101
|
3.5
|
49.3
|
1.0
|
CG
|
J:PRO12
|
4.0
|
52.0
|
1.0
|
CB
|
J:PRO12
|
4.0
|
52.0
|
1.0
|
C3D
|
A:CLA1101
|
4.2
|
48.9
|
1.0
|
C2D
|
A:CLA1101
|
4.3
|
47.8
|
1.0
|
C2B
|
A:CLA1101
|
4.3
|
47.5
|
1.0
|
C2C
|
A:CLA1101
|
4.3
|
47.2
|
1.0
|
C3C
|
A:CLA1101
|
4.4
|
47.8
|
1.0
|
C3B
|
A:CLA1101
|
4.4
|
47.9
|
1.0
|
C3A
|
A:CLA1101
|
4.5
|
50.3
|
1.0
|
ND1
|
A:HIS52
|
4.5
|
42.6
|
1.0
|
C2A
|
A:CLA1101
|
4.5
|
50.9
|
1.0
|
CG
|
A:HIS52
|
4.5
|
41.6
|
1.0
|
CD
|
J:PRO12
|
4.9
|
52.7
|
1.0
|
C39
|
J:BCR4013
|
4.9
|
62.7
|
1.0
|
CBD
|
A:CLA1101
|
5.0
|
51.3
|
1.0
|
|
Magnesium binding site 5 out
of 96 in 1jb0
Go back to
Magnesium Binding Sites List in 1jb0
Magnesium binding site 5 out
of 96 in the Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1102
b:43.5
occ:1.00
|
MG
|
A:CLA1102
|
0.0
|
43.5
|
1.0
|
ND
|
A:CLA1102
|
2.0
|
43.7
|
1.0
|
NC
|
A:CLA1102
|
2.1
|
42.0
|
1.0
|
NB
|
A:CLA1102
|
2.1
|
41.8
|
1.0
|
NA
|
A:CLA1102
|
2.2
|
45.9
|
1.0
|
NE2
|
A:HIS56
|
2.4
|
49.5
|
1.0
|
C4D
|
A:CLA1102
|
3.0
|
45.3
|
1.0
|
C1D
|
A:CLA1102
|
3.1
|
43.2
|
1.0
|
C1B
|
A:CLA1102
|
3.1
|
42.7
|
1.0
|
C1C
|
A:CLA1102
|
3.1
|
41.5
|
1.0
|
C4C
|
A:CLA1102
|
3.1
|
41.8
|
1.0
|
C4A
|
A:CLA1102
|
3.1
|
46.5
|
1.0
|
C4B
|
A:CLA1102
|
3.1
|
40.8
|
1.0
|
C1A
|
A:CLA1102
|
3.2
|
48.3
|
1.0
|
CE1
|
A:HIS56
|
3.2
|
48.0
|
1.0
|
CHB
|
A:CLA1102
|
3.4
|
44.8
|
1.0
|
CD2
|
A:HIS56
|
3.4
|
48.8
|
1.0
|
CHD
|
A:CLA1102
|
3.5
|
41.9
|
1.0
|
CHC
|
A:CLA1102
|
3.5
|
41.5
|
1.0
|
CHA
|
A:CLA1102
|
3.5
|
46.2
|
1.0
|
C3D
|
A:CLA1102
|
4.2
|
45.4
|
1.0
|
C7
|
A:CLA1109
|
4.2
|
66.0
|
1.0
|
C2D
|
A:CLA1102
|
4.3
|
43.4
|
1.0
|
C2C
|
A:CLA1102
|
4.3
|
41.1
|
1.0
|
C2B
|
A:CLA1102
|
4.3
|
41.8
|
1.0
|
C3C
|
A:CLA1102
|
4.3
|
40.5
|
1.0
|
C3B
|
A:CLA1102
|
4.4
|
41.9
|
1.0
|
ND1
|
A:HIS56
|
4.4
|
48.3
|
1.0
|
C3A
|
A:CLA1102
|
4.5
|
49.4
|
1.0
|
CG
|
A:HIS56
|
4.5
|
47.6
|
1.0
|
C2A
|
A:CLA1102
|
4.5
|
51.1
|
1.0
|
CBB
|
A:CLA1103
|
4.8
|
41.1
|
1.0
|
C6
|
A:CLA1109
|
4.9
|
67.0
|
1.0
|
CBD
|
A:CLA1102
|
5.0
|
47.6
|
1.0
|
C10
|
A:CLA1109
|
5.0
|
66.7
|
1.0
|
|
Magnesium binding site 6 out
of 96 in 1jb0
Go back to
Magnesium Binding Sites List in 1jb0
Magnesium binding site 6 out
of 96 in the Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1103
b:38.0
occ:1.00
|
MG
|
A:CLA1103
|
0.0
|
38.0
|
1.0
|
ND
|
A:CLA1103
|
2.0
|
38.0
|
1.0
|
NC
|
A:CLA1103
|
2.1
|
36.8
|
1.0
|
NB
|
A:CLA1103
|
2.1
|
38.4
|
1.0
|
NA
|
A:CLA1103
|
2.2
|
38.6
|
1.0
|
NE2
|
A:HIS76
|
2.4
|
44.1
|
1.0
|
C4D
|
A:CLA1103
|
3.0
|
38.0
|
1.0
|
C4A
|
A:CLA1103
|
3.1
|
39.7
|
1.0
|
C1D
|
A:CLA1103
|
3.1
|
36.7
|
1.0
|
C1B
|
A:CLA1103
|
3.1
|
38.1
|
1.0
|
C4C
|
A:CLA1103
|
3.1
|
36.3
|
1.0
|
CD2
|
A:HIS76
|
3.1
|
44.5
|
1.0
|
C1C
|
A:CLA1103
|
3.1
|
37.0
|
1.0
|
C4B
|
A:CLA1103
|
3.1
|
38.6
|
1.0
|
C1A
|
A:CLA1103
|
3.2
|
39.8
|
1.0
|
CMB
|
A:CLA1128
|
3.3
|
41.9
|
1.0
|
CHB
|
A:CLA1103
|
3.4
|
38.2
|
1.0
|
CHD
|
A:CLA1103
|
3.5
|
36.3
|
1.0
|
CHA
|
A:CLA1103
|
3.5
|
38.8
|
1.0
|
CHC
|
A:CLA1103
|
3.5
|
38.4
|
1.0
|
CE1
|
A:HIS76
|
3.5
|
45.1
|
1.0
|
C3D
|
A:CLA1103
|
4.2
|
38.1
|
1.0
|
CG2
|
A:ILE72
|
4.2
|
43.4
|
1.0
|
C2D
|
A:CLA1103
|
4.3
|
36.8
|
1.0
|
CG
|
A:HIS76
|
4.3
|
45.5
|
1.0
|
C2C
|
A:CLA1103
|
4.3
|
35.6
|
1.0
|
C3C
|
A:CLA1103
|
4.3
|
35.4
|
1.0
|
C2B
|
A:CLA1103
|
4.3
|
37.8
|
1.0
|
C3B
|
A:CLA1103
|
4.4
|
38.5
|
1.0
|
C3A
|
A:CLA1103
|
4.4
|
40.5
|
1.0
|
C2A
|
A:CLA1103
|
4.4
|
40.9
|
1.0
|
ND1
|
A:HIS76
|
4.5
|
45.9
|
1.0
|
C2B
|
A:CLA1128
|
4.8
|
43.0
|
1.0
|
CBD
|
A:CLA1103
|
5.0
|
39.6
|
1.0
|
|
Magnesium binding site 7 out
of 96 in 1jb0
Go back to
Magnesium Binding Sites List in 1jb0
Magnesium binding site 7 out
of 96 in the Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1104
b:42.4
occ:1.00
|
MG
|
A:CLA1104
|
0.0
|
42.4
|
1.0
|
ND
|
A:CLA1104
|
2.0
|
42.9
|
1.0
|
NB
|
A:CLA1104
|
2.1
|
42.5
|
1.0
|
NC
|
A:CLA1104
|
2.1
|
43.1
|
1.0
|
NA
|
A:CLA1104
|
2.2
|
43.8
|
1.0
|
NE2
|
A:HIS79
|
2.4
|
39.3
|
1.0
|
C4D
|
A:CLA1104
|
3.0
|
43.4
|
1.0
|
C1D
|
A:CLA1104
|
3.1
|
42.6
|
1.0
|
C1B
|
A:CLA1104
|
3.1
|
42.4
|
1.0
|
C4A
|
A:CLA1104
|
3.1
|
43.6
|
1.0
|
C1C
|
A:CLA1104
|
3.1
|
42.2
|
1.0
|
C4C
|
A:CLA1104
|
3.1
|
42.5
|
1.0
|
C4B
|
A:CLA1104
|
3.1
|
41.0
|
1.0
|
C1A
|
A:CLA1104
|
3.2
|
44.3
|
1.0
|
CD2
|
A:HIS79
|
3.3
|
39.5
|
1.0
|
CE1
|
A:HIS79
|
3.3
|
39.1
|
1.0
|
CHB
|
A:CLA1104
|
3.4
|
42.8
|
1.0
|
CHD
|
A:CLA1104
|
3.5
|
42.2
|
1.0
|
CHC
|
A:CLA1104
|
3.5
|
42.1
|
1.0
|
CHA
|
A:CLA1104
|
3.5
|
43.9
|
1.0
|
C16
|
A:CLA1104
|
3.8
|
43.8
|
1.0
|
C3D
|
A:CLA1104
|
4.2
|
42.7
|
1.0
|
C2D
|
A:CLA1104
|
4.2
|
42.2
|
1.0
|
C2B
|
A:CLA1104
|
4.3
|
41.0
|
1.0
|
C2C
|
A:CLA1104
|
4.4
|
41.5
|
1.0
|
C3C
|
A:CLA1104
|
4.4
|
41.8
|
1.0
|
C3B
|
A:CLA1104
|
4.4
|
40.1
|
1.0
|
C17
|
A:CLA1104
|
4.4
|
44.7
|
1.0
|
C3A
|
A:CLA1104
|
4.4
|
44.5
|
1.0
|
ND1
|
A:HIS79
|
4.5
|
39.1
|
1.0
|
CG
|
A:HIS79
|
4.5
|
40.9
|
1.0
|
C2A
|
A:CLA1104
|
4.5
|
45.0
|
1.0
|
CMA
|
A:CLA1103
|
4.8
|
39.2
|
1.0
|
C18
|
A:CLA1104
|
4.9
|
46.0
|
1.0
|
CBD
|
A:CLA1104
|
4.9
|
44.6
|
1.0
|
|
Magnesium binding site 8 out
of 96 in 1jb0
Go back to
Magnesium Binding Sites List in 1jb0
Magnesium binding site 8 out
of 96 in the Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1105
b:57.7
occ:1.00
|
MG
|
A:CLA1105
|
0.0
|
57.7
|
1.0
|
ND
|
A:CLA1105
|
2.0
|
58.1
|
1.0
|
NB
|
A:CLA1105
|
2.1
|
58.0
|
1.0
|
NC
|
A:CLA1105
|
2.1
|
58.6
|
1.0
|
NA
|
A:CLA1105
|
2.2
|
59.6
|
1.0
|
NE2
|
A:HIS93
|
2.3
|
48.5
|
1.0
|
C4D
|
A:CLA1105
|
3.0
|
57.9
|
1.0
|
C1D
|
A:CLA1105
|
3.1
|
57.8
|
1.0
|
C1B
|
A:CLA1105
|
3.1
|
57.8
|
1.0
|
C1C
|
A:CLA1105
|
3.1
|
58.4
|
1.0
|
C4C
|
A:CLA1105
|
3.1
|
58.2
|
1.0
|
C4A
|
A:CLA1105
|
3.1
|
59.9
|
1.0
|
C4B
|
A:CLA1105
|
3.1
|
57.4
|
1.0
|
C1A
|
A:CLA1105
|
3.2
|
60.0
|
1.0
|
CE1
|
A:HIS93
|
3.2
|
48.7
|
1.0
|
CD2
|
A:HIS93
|
3.3
|
48.9
|
1.0
|
CHB
|
A:CLA1105
|
3.4
|
59.0
|
1.0
|
CHD
|
A:CLA1105
|
3.5
|
57.7
|
1.0
|
CHA
|
A:CLA1105
|
3.5
|
58.8
|
1.0
|
CHC
|
A:CLA1105
|
3.5
|
58.2
|
1.0
|
C3D
|
A:CLA1105
|
4.2
|
58.2
|
1.0
|
C2D
|
A:CLA1105
|
4.3
|
58.6
|
1.0
|
C2B
|
A:CLA1105
|
4.3
|
57.5
|
1.0
|
C2C
|
A:CLA1105
|
4.4
|
58.2
|
1.0
|
C3C
|
A:CLA1105
|
4.4
|
59.0
|
1.0
|
C3B
|
A:CLA1105
|
4.4
|
57.3
|
1.0
|
ND1
|
A:HIS93
|
4.4
|
48.9
|
1.0
|
CG
|
A:HIS93
|
4.5
|
49.5
|
1.0
|
C3A
|
A:CLA1105
|
4.5
|
61.0
|
1.0
|
C2A
|
A:CLA1105
|
4.5
|
61.8
|
1.0
|
CBD
|
A:CLA1105
|
5.0
|
58.2
|
1.0
|
|
Magnesium binding site 9 out
of 96 in 1jb0
Go back to
Magnesium Binding Sites List in 1jb0
Magnesium binding site 9 out
of 96 in the Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1106
b:38.0
occ:1.00
|
MG
|
A:CLA1106
|
0.0
|
38.0
|
1.0
|
ND
|
A:CLA1106
|
2.0
|
37.2
|
1.0
|
NC
|
A:CLA1106
|
2.1
|
34.3
|
1.0
|
NB
|
A:CLA1106
|
2.1
|
35.2
|
1.0
|
OE1
|
A:GLN115
|
2.1
|
57.0
|
1.0
|
NA
|
A:CLA1106
|
2.2
|
38.0
|
1.0
|
C4D
|
A:CLA1106
|
3.0
|
37.9
|
1.0
|
C1C
|
A:CLA1106
|
3.1
|
34.6
|
1.0
|
CD
|
A:GLN115
|
3.1
|
55.3
|
1.0
|
C1B
|
A:CLA1106
|
3.1
|
35.9
|
1.0
|
C1D
|
A:CLA1106
|
3.1
|
36.9
|
1.0
|
C4C
|
A:CLA1106
|
3.1
|
34.4
|
1.0
|
C4A
|
A:CLA1106
|
3.1
|
39.5
|
1.0
|
C4B
|
A:CLA1106
|
3.1
|
35.1
|
1.0
|
C1A
|
A:CLA1106
|
3.2
|
41.0
|
1.0
|
NE2
|
A:GLN115
|
3.4
|
53.6
|
1.0
|
CHB
|
A:CLA1106
|
3.4
|
37.3
|
1.0
|
CHD
|
A:CLA1106
|
3.5
|
35.3
|
1.0
|
CHC
|
A:CLA1106
|
3.5
|
35.7
|
1.0
|
CHA
|
A:CLA1106
|
3.5
|
39.7
|
1.0
|
C4
|
A:CLA1126
|
4.2
|
70.7
|
1.0
|
C3D
|
A:CLA1106
|
4.2
|
37.0
|
1.0
|
C2D
|
A:CLA1106
|
4.3
|
36.4
|
1.0
|
C6
|
A:CLA1126
|
4.3
|
74.0
|
1.0
|
C2C
|
A:CLA1106
|
4.3
|
34.0
|
1.0
|
C3C
|
A:CLA1106
|
4.3
|
34.0
|
1.0
|
C2B
|
A:CLA1106
|
4.3
|
35.9
|
1.0
|
C3B
|
A:CLA1106
|
4.4
|
35.9
|
1.0
|
C3A
|
A:CLA1106
|
4.4
|
41.3
|
1.0
|
CG
|
A:GLN115
|
4.5
|
54.2
|
1.0
|
C2A
|
A:CLA1106
|
4.5
|
43.5
|
1.0
|
CB
|
A:GLN115
|
4.9
|
52.3
|
1.0
|
CBD
|
A:CLA1106
|
5.0
|
41.1
|
1.0
|
|
Magnesium binding site 10 out
of 96 in 1jb0
Go back to
Magnesium Binding Sites List in 1jb0
Magnesium binding site 10 out
of 96 in the Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Crystal Structure of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1107
b:40.5
occ:1.00
|
MG
|
A:CLA1107
|
0.0
|
40.5
|
1.0
|
ND
|
A:CLA1107
|
2.0
|
39.5
|
1.0
|
NB
|
A:CLA1107
|
2.1
|
40.0
|
1.0
|
OE1
|
A:GLN123
|
2.1
|
51.5
|
1.0
|
NC
|
A:CLA1107
|
2.1
|
39.9
|
1.0
|
NA
|
A:CLA1107
|
2.2
|
40.8
|
1.0
|
C4D
|
A:CLA1107
|
2.9
|
41.3
|
1.0
|
C1D
|
A:CLA1107
|
3.1
|
40.4
|
1.0
|
C1B
|
A:CLA1107
|
3.1
|
41.5
|
1.0
|
C4C
|
A:CLA1107
|
3.1
|
39.3
|
1.0
|
C4A
|
A:CLA1107
|
3.1
|
42.9
|
1.0
|
C4B
|
A:CLA1107
|
3.1
|
40.4
|
1.0
|
C1C
|
A:CLA1107
|
3.1
|
39.2
|
1.0
|
CD
|
A:GLN123
|
3.2
|
50.6
|
1.0
|
C1A
|
A:CLA1107
|
3.2
|
42.6
|
1.0
|
CHB
|
A:CLA1107
|
3.4
|
41.6
|
1.0
|
CHD
|
A:CLA1107
|
3.4
|
40.5
|
1.0
|
CHA
|
A:CLA1107
|
3.5
|
42.4
|
1.0
|
CHC
|
A:CLA1107
|
3.5
|
39.8
|
1.0
|
C19
|
A:CLA1126
|
3.6
|
75.3
|
1.0
|
NE2
|
A:GLN123
|
3.7
|
48.6
|
1.0
|
C3D
|
A:CLA1107
|
4.2
|
41.9
|
1.0
|
C2D
|
A:CLA1107
|
4.2
|
41.1
|
1.0
|
C2B
|
A:CLA1107
|
4.3
|
41.0
|
1.0
|
C3B
|
A:CLA1107
|
4.4
|
40.5
|
1.0
|
C3C
|
A:CLA1107
|
4.4
|
40.1
|
1.0
|
C2C
|
A:CLA1107
|
4.4
|
39.0
|
1.0
|
C18
|
A:CLA1126
|
4.4
|
74.9
|
1.0
|
CG
|
A:GLN123
|
4.4
|
50.1
|
1.0
|
C3A
|
A:CLA1107
|
4.5
|
43.8
|
1.0
|
C2A
|
A:CLA1107
|
4.5
|
44.4
|
1.0
|
CB
|
A:GLN123
|
4.5
|
49.5
|
1.0
|
CBD
|
A:CLA1107
|
4.9
|
43.3
|
1.0
|
|
Reference:
P.Jordan,
P.Fromme,
H.T.Witt,
O.Klukas,
W.Saenger,
N.Krauss.
Three-Dimensional Structure of Cyanobacterial Photosystem I at 2.5 A Resolution Nature V. 411 909 2001.
ISSN: ISSN 0028-0836
PubMed: 11418848
DOI: 10.1038/35082000
Page generated: Tue Aug 13 05:47:39 2024
|