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Magnesium in PDB 1js9: Brome Mosaic Virus

Protein crystallography data

The structure of Brome Mosaic Virus, PDB code: 1js9 was solved by R.W.Lucas, S.B.Larson, A.Mcpherson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.70 / 3.40
Space group H 3 5
Cell size a, b, c (Å), α, β, γ (°) 269.244, 269.244, 638.136, 90.00, 90.00, 120.00
R / Rfree (%) 23.8 / 25

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Brome Mosaic Virus (pdb code 1js9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Brome Mosaic Virus, PDB code: 1js9:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 1js9

Go back to Magnesium Binding Sites List in 1js9
Magnesium binding site 1 out of 2 in the Brome Mosaic Virus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Brome Mosaic Virus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:55.0
occ:0.20
OE2 A:GLU131 4.8 1.0 1.0

Magnesium binding site 2 out of 2 in 1js9

Go back to Magnesium Binding Sites List in 1js9
Magnesium binding site 2 out of 2 in the Brome Mosaic Virus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Brome Mosaic Virus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1001

b:58.4
occ:1.00
OE1 B:GLU84 2.3 0.6 1.0
OE2 A:GLU84 2.4 0.6 1.0
OE1 C:GLU84 2.5 0.5 1.0
OE2 C:GLU84 2.8 0.3 1.0
CD C:GLU84 3.0 0.9 1.0
OG1 C:THR145 3.4 0.7 1.0
CD B:GLU84 3.5 0.7 1.0
CD A:GLU84 3.7 0.1 1.0
OE2 B:GLU84 4.0 0.7 1.0
OG1 B:THR145 4.1 0.2 1.0
OG1 A:THR145 4.3 0.0 1.0
OE1 A:GLU84 4.4 0.4 1.0
CG C:GLU84 4.5 0.3 1.0
CB C:THR145 4.6 0.4 1.0
CG A:GLU84 4.7 0.1 1.0
CG B:GLU84 4.7 83.8 1.0
CG2 C:THR145 4.7 100.0 1.0

Reference:

R.W.Lucas, S.B.Larson, A.Mcpherson. The Crystallographic Structure of Brome Mosaic Virus. J.Mol.Biol. V. 317 95 2002.
ISSN: ISSN 0022-2836
PubMed: 11916381
DOI: 10.1006/JMBI.2001.5389
Page generated: Tue Aug 13 06:39:08 2024

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