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Magnesium in PDB 1jx2: Crystal Structure of the Nucleotide-Free Dynamin A Gtpase Domain, Determined As Myosin Fusion

Protein crystallography data

The structure of Crystal Structure of the Nucleotide-Free Dynamin A Gtpase Domain, Determined As Myosin Fusion, PDB code: 1jx2 was solved by H.H.Niemann, M.L.W.Knetsch, A.Scherer, D.J.Manstein, F.J.Kull, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.96 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.450, 62.040, 181.200, 90.00, 94.79, 90.00
R / Rfree (%) 19.7 / 25.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Nucleotide-Free Dynamin A Gtpase Domain, Determined As Myosin Fusion (pdb code 1jx2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Nucleotide-Free Dynamin A Gtpase Domain, Determined As Myosin Fusion, PDB code: 1jx2:

Magnesium binding site 1 out of 1 in 1jx2

Go back to Magnesium Binding Sites List in 1jx2
Magnesium binding site 1 out of 1 in the Crystal Structure of the Nucleotide-Free Dynamin A Gtpase Domain, Determined As Myosin Fusion


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Nucleotide-Free Dynamin A Gtpase Domain, Determined As Myosin Fusion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1202

b:19.4
occ:1.00
OG1 A:THR197 2.2 16.0 1.0
O A:HOH1308 2.2 7.7 1.0
O A:HOH1347 2.2 15.1 1.0
OG A:SER248 2.2 14.1 1.0
O2B A:ADP1203 2.3 19.3 1.0
O A:HOH1360 2.4 16.0 1.0
CB A:THR197 3.1 18.6 1.0
CB A:SER248 3.2 19.5 1.0
PB A:ADP1203 3.4 15.8 1.0
O3B A:ADP1203 3.4 14.0 1.0
N A:SER248 3.8 13.9 1.0
N A:THR197 3.9 17.0 1.0
CA A:SER248 4.1 10.1 1.0
CA A:THR197 4.1 9.0 1.0
O A:HOH1408 4.2 21.6 1.0
O2A A:ADP1203 4.2 18.6 1.0
OD1 A:ASP465 4.2 14.2 1.0
CG2 A:THR197 4.2 5.2 1.0
OD2 A:ASP465 4.2 15.5 1.0
O3A A:ADP1203 4.3 18.5 1.0
O1B A:ADP1203 4.4 20.8 1.0
O A:HOH1356 4.4 18.7 1.0
PA A:ADP1203 4.6 19.1 1.0
CG A:ASP465 4.6 13.4 1.0
CB A:LYS196 4.8 8.0 1.0
O A:ASN246 4.8 13.7 1.0
O1A A:ADP1203 4.8 10.9 1.0
CE A:LYS196 4.8 18.1 1.0
C A:SER247 4.9 14.0 1.0
NZ A:LYS196 4.9 12.0 1.0
OD1 A:ASN244 4.9 17.4 1.0
C A:LYS196 5.0 18.2 1.0

Reference:

H.H.Niemann, M.L.Knetsch, A.Scherer, D.J.Manstein, F.J.Kull. Crystal Structure of A Dynamin Gtpase Domain in Both Nucleotide-Free and Gdp-Bound Forms. Embo J. V. 20 5813 2001.
ISSN: ISSN 0261-4189
PubMed: 11689422
DOI: 10.1093/EMBOJ/20.21.5813
Page generated: Mon Dec 14 06:11:51 2020

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