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Magnesium in PDB 1jzv: Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna

Protein crystallography data

The structure of Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna, PDB code: 1jzv was solved by Y.Xiong, C.Sudarsanakumar, J.Deng, B.Pan, M.Sundaralingam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.70
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 45.800, 45.800, 89.650, 90.00, 90.00, 90.00
R / Rfree (%) 20.3 / 23.3

Other elements in 1jzv:

The structure of Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna also contains other interesting chemical elements:

Bromine (Br) 2 atoms
Iodine (I) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna (pdb code 1jzv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna, PDB code: 1jzv:

Magnesium binding site 1 out of 1 in 1jzv

Go back to Magnesium Binding Sites List in 1jzv
Magnesium binding site 1 out of 1 in the Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg300

b:31.2
occ:1.00
O C:HOH303 2.0 23.0 1.0
O C:HOH302 2.1 24.4 1.0
O D:HOH305 2.2 26.6 1.0
O C:HOH301 2.2 26.2 1.0
O C:HOH304 2.3 29.8 1.0
O C:HOH306 2.3 25.8 1.0
O C:HOH329 4.1 31.9 1.0
O C:HOH313 4.1 26.9 1.0
O6 C:G24 4.2 18.2 1.0
N4 C:C23 4.3 18.1 1.0
O C:HOH323 4.3 25.9 1.0
O D:HOH331 4.3 31.2 1.0
O D:HOH370 4.3 40.6 1.0
O D:HOH360 4.4 33.0 1.0
N7 C:G24 4.4 18.6 1.0
N6 C:A25 4.5 18.6 1.0
O C:HOH317 4.6 25.2 1.0
C5 C:C23 4.8 19.7 1.0
C4 C:C23 4.9 20.3 1.0
C6 C:G24 5.0 19.1 1.0

Reference:

Y.Xiong, C.Sudarsanakumar, J.Deng, M.Pan, M.Sundaralingam. Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna To Be Published.
Page generated: Mon Dec 14 06:12:23 2020

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