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Magnesium in PDB 1kbz: Crystal Structure of Apo-Dtdp-6-Deoxy-L-Lyxo-4-Hexulose Reductase (Rmld) From Salmonella Enterica Serovar Typhimurium

Enzymatic activity of Crystal Structure of Apo-Dtdp-6-Deoxy-L-Lyxo-4-Hexulose Reductase (Rmld) From Salmonella Enterica Serovar Typhimurium

All present enzymatic activity of Crystal Structure of Apo-Dtdp-6-Deoxy-L-Lyxo-4-Hexulose Reductase (Rmld) From Salmonella Enterica Serovar Typhimurium:
1.1.1.133;

Protein crystallography data

The structure of Crystal Structure of Apo-Dtdp-6-Deoxy-L-Lyxo-4-Hexulose Reductase (Rmld) From Salmonella Enterica Serovar Typhimurium, PDB code: 1kbz was solved by W.Blankenfeldt, I.D.Kerr, M.F.Giraud, H.J.Mcmiken, G.A.Leonard, C.Whitfield, P.Messner, M.Graninger, J.H.Naismith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 81.65 / 2.20
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 47.533, 71.901, 82.158, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 25.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Apo-Dtdp-6-Deoxy-L-Lyxo-4-Hexulose Reductase (Rmld) From Salmonella Enterica Serovar Typhimurium (pdb code 1kbz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Apo-Dtdp-6-Deoxy-L-Lyxo-4-Hexulose Reductase (Rmld) From Salmonella Enterica Serovar Typhimurium, PDB code: 1kbz:

Magnesium binding site 1 out of 1 in 1kbz

Go back to Magnesium Binding Sites List in 1kbz
Magnesium binding site 1 out of 1 in the Crystal Structure of Apo-Dtdp-6-Deoxy-L-Lyxo-4-Hexulose Reductase (Rmld) From Salmonella Enterica Serovar Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Apo-Dtdp-6-Deoxy-L-Lyxo-4-Hexulose Reductase (Rmld) From Salmonella Enterica Serovar Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:25.3
occ:0.50
 O A:HOH555 2.1 26.1 1.0
O A:HOH506 2.2 22.6 1.0
O A:HOH508 2.2 21.7 1.0
OE2 A:GLU190 4.1 25.8 1.0
OE2 A:GLU292 4.1 28.8 1.0
OE1 A:GLU15 4.1 24.7 1.0
OE2 A:GLU15 4.3 24.1 1.0
OE1 A:GLU292 4.3 29.0 1.0
O A:HOH559 4.3 38.6 1.0
CD A:GLU292 4.6 30.9 1.0
CD A:GLU15 4.7 24.7 1.0
NH2 A:ARG288 4.9 25.3 1.0
O A:HOH671 4.9 70.4 1.0

Reference:

W.Blankenfeldt, I.D.Kerr, M.F.Giraud, H.J.Mcmiken, G.Leonard, C.Whitfield, P.Messner, M.Graninger, J.H.Naismith. Variation on A Theme of Sdr. Dtdp-6-Deoxy-L- Lyxo-4-Hexulose Reductase (Rmld) Shows A New MG2+-Dependent Dimerization Mode. Structure V. 10 773 2002.
ISSN: ISSN 0969-2126
PubMed: 12057193
DOI: 10.1016/S0969-2126(02)00770-0
Page generated: Sun Aug 10 00:07:17 2025

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