Atomistry » Magnesium » PDB 1k9w-1kk3 » 1kf0
Atomistry »
  Magnesium »
    PDB 1k9w-1kk3 »
      1kf0 »

Magnesium in PDB 1kf0: Crystal Structure of Pig Muscle Phosphoglycerate Kinase Ternary Complex with Amp-Pcp and 3PG

Enzymatic activity of Crystal Structure of Pig Muscle Phosphoglycerate Kinase Ternary Complex with Amp-Pcp and 3PG

All present enzymatic activity of Crystal Structure of Pig Muscle Phosphoglycerate Kinase Ternary Complex with Amp-Pcp and 3PG:
2.7.2.3;

Protein crystallography data

The structure of Crystal Structure of Pig Muscle Phosphoglycerate Kinase Ternary Complex with Amp-Pcp and 3PG, PDB code: 1kf0 was solved by Z.Kovari, B.Flachner, G.Naray-Szabo, M.Vas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 36.600, 110.300, 48.000, 90.00, 93.90, 90.00
R / Rfree (%) 17.3 / 25.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Pig Muscle Phosphoglycerate Kinase Ternary Complex with Amp-Pcp and 3PG (pdb code 1kf0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Pig Muscle Phosphoglycerate Kinase Ternary Complex with Amp-Pcp and 3PG, PDB code: 1kf0:

Magnesium binding site 1 out of 1 in 1kf0

Go back to Magnesium Binding Sites List in 1kf0
Magnesium binding site 1 out of 1 in the Crystal Structure of Pig Muscle Phosphoglycerate Kinase Ternary Complex with Amp-Pcp and 3PG


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Pig Muscle Phosphoglycerate Kinase Ternary Complex with Amp-Pcp and 3PG within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg518

b:63.1
occ:1.00
O2B A:ACP418 2.2 63.1 1.0
OD1 A:ASP218 2.3 34.8 1.0
CG A:ASP218 3.4 34.8 1.0
PB A:ACP418 3.5 63.1 1.0
O1A A:ACP418 3.5 63.1 1.0
C3B A:ACP418 3.8 63.1 1.0
NZ A:LYS219 4.0 33.1 1.0
O3A A:ACP418 4.0 63.1 1.0
OD2 A:ASP218 4.1 34.8 1.0
PA A:ACP418 4.2 63.1 1.0
O3G A:ACP418 4.3 63.1 1.0
CB A:ASP218 4.6 10.9 1.0
O2A A:ACP418 4.6 63.1 1.0
O1B A:ACP418 4.8 63.1 1.0
PG A:ACP418 4.9 63.1 1.0

Reference:

Z.Kovari, B.Flachner, G.Naray-Szabo, M.Vas. Crystallographic and Thiol-Reactivity Studies on the Complex of Pig Muscle Phosphoglycerate Kinase with Atp Analogues: Correlation Between Nucleotide Binding Mode and Helix Flexibility. Biochemistry V. 41 8796 2002.
ISSN: ISSN 0006-2960
PubMed: 12102622
DOI: 10.1021/BI020210J
Page generated: Mon Dec 14 06:20:13 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy