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Magnesium in PDB 1l3j: Crystal Structure of Oxalate Decarboxylase Formate Complex

Protein crystallography data

The structure of Crystal Structure of Oxalate Decarboxylase Formate Complex, PDB code: 1l3j was solved by R.Anand, P.C.Dorrestein, C.Kinsland, T.P.Begley, S.E.Ealick, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.72 / 1.90
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 154.800, 154.800, 122.160, 90.00, 90.00, 120.00
R / Rfree (%) 16.9 / 19.3

Other elements in 1l3j:

The structure of Crystal Structure of Oxalate Decarboxylase Formate Complex also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Oxalate Decarboxylase Formate Complex (pdb code 1l3j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Oxalate Decarboxylase Formate Complex, PDB code: 1l3j:

Magnesium binding site 1 out of 1 in 1l3j

Go back to Magnesium Binding Sites List in 1l3j
Magnesium binding site 1 out of 1 in the Crystal Structure of Oxalate Decarboxylase Formate Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Oxalate Decarboxylase Formate Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:8.6
occ:1.00
NE2 A:HIS174 2.0 13.4 1.0
O A:HOH1033 2.5 49.0 1.0
O A:HOH1034 2.9 35.0 1.0
CD2 A:HIS174 2.9 11.6 1.0
O2 A:FMT650 2.9 30.0 1.0
CE1 A:HIS174 3.0 13.2 1.0
C A:FMT650 3.9 30.0 1.0
CG A:HIS174 4.1 11.8 1.0
ND1 A:HIS174 4.1 10.9 1.0

Reference:

R.Anand, P.C.Dorrestein, C.Kinsland, T.P.Begley, S.E.Ealick. Structure of Oxalate Decarboxylase From Bacillus Subtilis at 1.75 A Resolution. Biochemistry V. 41 7659 2002.
ISSN: ISSN 0006-2960
PubMed: 12056897
DOI: 10.1021/BI0200965
Page generated: Mon Dec 14 06:22:50 2020

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