Magnesium in PDB 1lgh: Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum
Protein crystallography data
The structure of Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum, PDB code: 1lgh
was solved by
J.Koepke,
X.Hu,
K.Schulten,
H.Michel,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
8.00 /
2.40
|
Space group
|
P 4 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
91.600,
91.600,
209.970,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
21.1 /
23.2
|
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Magnesium atom in the Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum
(pdb code 1lgh). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the
Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum, PDB code: 1lgh:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 12 in 1lgh
Go back to
Magnesium Binding Sites List in 1lgh
Magnesium binding site 1 out
of 12 in the Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg57
b:29.4
occ:1.00
|
MG
|
A:BCL57
|
0.0
|
29.4
|
1.0
|
HE2
|
A:HIS34
|
1.4
|
0.0
|
1.0
|
NB
|
A:BCL57
|
2.0
|
27.2
|
1.0
|
ND
|
A:BCL57
|
2.0
|
31.5
|
1.0
|
NA
|
A:BCL57
|
2.1
|
28.7
|
1.0
|
NC
|
A:BCL57
|
2.2
|
33.4
|
1.0
|
NE2
|
A:HIS34
|
2.4
|
20.7
|
1.0
|
C4D
|
A:BCL57
|
3.0
|
30.8
|
1.0
|
C1B
|
A:BCL57
|
3.0
|
29.8
|
1.0
|
C4B
|
A:BCL57
|
3.0
|
31.3
|
1.0
|
C4A
|
A:BCL57
|
3.1
|
28.4
|
1.0
|
C1D
|
A:BCL57
|
3.1
|
32.3
|
1.0
|
C1A
|
A:BCL57
|
3.2
|
25.0
|
1.0
|
C1C
|
A:BCL57
|
3.2
|
30.9
|
1.0
|
C4C
|
A:BCL57
|
3.2
|
30.3
|
1.0
|
CE1
|
A:HIS34
|
3.2
|
24.6
|
1.0
|
CD2
|
A:HIS34
|
3.4
|
26.8
|
1.0
|
CHB
|
A:BCL57
|
3.4
|
29.4
|
1.0
|
CHC
|
A:BCL57
|
3.5
|
32.0
|
1.0
|
CHA
|
A:BCL57
|
3.5
|
28.5
|
1.0
|
CHD
|
A:BCL57
|
3.5
|
29.9
|
1.0
|
C9
|
B:DET77
|
4.2
|
51.5
|
1.0
|
C2B
|
A:BCL57
|
4.2
|
28.5
|
1.0
|
C3D
|
A:BCL57
|
4.2
|
33.0
|
1.0
|
C3B
|
A:BCL57
|
4.3
|
36.9
|
1.0
|
C10
|
B:DET77
|
4.3
|
52.9
|
1.0
|
C2D
|
A:BCL57
|
4.3
|
31.7
|
1.0
|
ND1
|
A:HIS34
|
4.4
|
23.1
|
1.0
|
C11
|
B:DET77
|
4.4
|
60.9
|
1.0
|
C3A
|
A:BCL57
|
4.4
|
26.8
|
1.0
|
C2A
|
A:BCL57
|
4.5
|
27.4
|
1.0
|
C2C
|
A:BCL57
|
4.5
|
31.0
|
1.0
|
C3C
|
A:BCL57
|
4.5
|
32.8
|
1.0
|
CG
|
A:HIS34
|
4.5
|
27.9
|
1.0
|
CMD
|
B:BCL59
|
4.6
|
27.3
|
1.0
|
CBD
|
A:BCL57
|
5.0
|
34.7
|
1.0
|
C8
|
B:DET77
|
5.0
|
52.3
|
1.0
|
|
Magnesium binding site 2 out
of 12 in 1lgh
Go back to
Magnesium Binding Sites List in 1lgh
Magnesium binding site 2 out
of 12 in the Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg58
b:47.0
occ:1.00
|
MG
|
A:BCL58
|
0.0
|
47.0
|
1.0
|
ND
|
A:BCL58
|
2.0
|
41.9
|
1.0
|
NB
|
A:BCL58
|
2.1
|
47.7
|
1.0
|
NC
|
A:BCL58
|
2.1
|
42.9
|
1.0
|
NA
|
A:BCL58
|
2.1
|
52.4
|
1.0
|
OD2
|
A:ASP6
|
2.5
|
51.1
|
1.0
|
C4D
|
A:BCL58
|
2.9
|
47.1
|
1.0
|
C1B
|
A:BCL58
|
3.1
|
50.1
|
1.0
|
C4B
|
A:BCL58
|
3.1
|
48.6
|
1.0
|
C1C
|
A:BCL58
|
3.1
|
45.6
|
1.0
|
C1D
|
A:BCL58
|
3.1
|
45.9
|
1.0
|
C4C
|
A:BCL58
|
3.1
|
45.6
|
1.0
|
C4A
|
A:BCL58
|
3.1
|
54.7
|
1.0
|
C1A
|
A:BCL58
|
3.1
|
56.9
|
1.0
|
CG
|
A:ASP6
|
3.3
|
56.5
|
1.0
|
CHA
|
A:BCL58
|
3.4
|
50.8
|
1.0
|
CHC
|
A:BCL58
|
3.4
|
45.2
|
1.0
|
CHB
|
A:BCL58
|
3.5
|
49.6
|
1.0
|
CHD
|
A:BCL58
|
3.5
|
43.2
|
1.0
|
OD1
|
A:ASP6
|
3.8
|
48.4
|
1.0
|
C9
|
B:BCL59
|
4.0
|
57.6
|
1.0
|
C3D
|
A:BCL58
|
4.2
|
46.7
|
1.0
|
C2B
|
A:BCL58
|
4.3
|
51.7
|
1.0
|
C3B
|
A:BCL58
|
4.3
|
53.5
|
1.0
|
CB
|
A:ASP6
|
4.3
|
58.7
|
1.0
|
C2D
|
A:BCL58
|
4.3
|
45.8
|
1.0
|
O
|
A:HOH98
|
4.3
|
44.5
|
1.0
|
C2C
|
A:BCL58
|
4.4
|
51.2
|
1.0
|
C3C
|
A:BCL58
|
4.4
|
53.0
|
1.0
|
C2A
|
A:BCL58
|
4.4
|
64.4
|
1.0
|
C3A
|
A:BCL58
|
4.4
|
60.5
|
1.0
|
CBC
|
A:BCL58
|
4.8
|
53.2
|
1.0
|
HD22
|
A:ASN2
|
4.8
|
0.0
|
1.0
|
H1
|
A:HOH98
|
4.8
|
0.0
|
1.0
|
CB
|
A:PRO3
|
4.8
|
81.3
|
1.0
|
CBD
|
A:BCL58
|
4.9
|
53.3
|
1.0
|
|
Magnesium binding site 3 out
of 12 in 1lgh
Go back to
Magnesium Binding Sites List in 1lgh
Magnesium binding site 3 out
of 12 in the Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg59
b:30.1
occ:1.00
|
MG
|
B:BCL59
|
0.0
|
30.1
|
1.0
|
HE2
|
B:HIS35
|
1.5
|
0.0
|
1.0
|
ND
|
B:BCL59
|
2.0
|
31.4
|
1.0
|
NB
|
B:BCL59
|
2.1
|
30.8
|
1.0
|
NC
|
B:BCL59
|
2.1
|
29.4
|
1.0
|
NA
|
B:BCL59
|
2.2
|
30.9
|
1.0
|
NE2
|
B:HIS35
|
2.3
|
34.0
|
1.0
|
C4D
|
B:BCL59
|
3.0
|
32.2
|
1.0
|
C4B
|
B:BCL59
|
3.1
|
35.0
|
1.0
|
C1D
|
B:BCL59
|
3.1
|
33.3
|
1.0
|
C1B
|
B:BCL59
|
3.1
|
33.9
|
1.0
|
C1C
|
B:BCL59
|
3.1
|
30.9
|
1.0
|
C4C
|
B:BCL59
|
3.1
|
32.0
|
1.0
|
CE1
|
B:HIS35
|
3.2
|
41.1
|
1.0
|
C4A
|
B:BCL59
|
3.2
|
28.9
|
1.0
|
C1A
|
B:BCL59
|
3.2
|
28.0
|
1.0
|
CD2
|
B:HIS35
|
3.4
|
38.1
|
1.0
|
CHC
|
B:BCL59
|
3.4
|
33.1
|
1.0
|
CHD
|
B:BCL59
|
3.5
|
30.8
|
1.0
|
CHA
|
B:BCL59
|
3.5
|
31.3
|
1.0
|
CHB
|
B:BCL59
|
3.5
|
31.8
|
1.0
|
CMB
|
D:BCL57
|
3.7
|
26.0
|
1.0
|
C3D
|
B:BCL59
|
4.2
|
33.1
|
1.0
|
C2D
|
B:BCL59
|
4.3
|
32.5
|
1.0
|
C2B
|
B:BCL59
|
4.3
|
29.4
|
1.0
|
C3B
|
B:BCL59
|
4.3
|
38.8
|
1.0
|
ND1
|
B:HIS35
|
4.3
|
38.0
|
1.0
|
CBB
|
D:BCL57
|
4.3
|
49.8
|
1.0
|
C2C
|
B:BCL59
|
4.4
|
32.2
|
1.0
|
C3C
|
B:BCL59
|
4.4
|
31.9
|
1.0
|
CG
|
B:HIS35
|
4.5
|
35.4
|
1.0
|
C3A
|
B:BCL59
|
4.5
|
25.3
|
1.0
|
C2A
|
B:BCL59
|
4.5
|
27.7
|
1.0
|
CAB
|
D:BCL57
|
4.7
|
33.0
|
1.0
|
C2B
|
D:BCL57
|
4.7
|
28.5
|
1.0
|
CG1
|
A:VAL33
|
4.8
|
18.6
|
1.0
|
CBD
|
B:BCL59
|
5.0
|
33.9
|
1.0
|
|
Magnesium binding site 4 out
of 12 in 1lgh
Go back to
Magnesium Binding Sites List in 1lgh
Magnesium binding site 4 out
of 12 in the Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg57
b:29.4
occ:1.00
|
MG
|
D:BCL57
|
0.0
|
29.4
|
1.0
|
HE2
|
D:HIS34
|
1.4
|
0.0
|
1.0
|
NB
|
D:BCL57
|
2.0
|
27.2
|
1.0
|
ND
|
D:BCL57
|
2.0
|
31.5
|
1.0
|
NA
|
D:BCL57
|
2.1
|
28.7
|
1.0
|
NC
|
D:BCL57
|
2.2
|
33.4
|
1.0
|
NE2
|
D:HIS34
|
2.4
|
20.7
|
1.0
|
C4D
|
D:BCL57
|
3.0
|
30.8
|
1.0
|
C1B
|
D:BCL57
|
3.0
|
29.8
|
1.0
|
C4B
|
D:BCL57
|
3.0
|
31.3
|
1.0
|
C4A
|
D:BCL57
|
3.1
|
28.4
|
1.0
|
C1D
|
D:BCL57
|
3.1
|
32.3
|
1.0
|
C1A
|
D:BCL57
|
3.2
|
25.0
|
1.0
|
C1C
|
D:BCL57
|
3.2
|
30.9
|
1.0
|
C4C
|
D:BCL57
|
3.2
|
30.3
|
1.0
|
CE1
|
D:HIS34
|
3.2
|
24.6
|
1.0
|
CD2
|
D:HIS34
|
3.4
|
26.8
|
1.0
|
CHB
|
D:BCL57
|
3.4
|
29.4
|
1.0
|
CHC
|
D:BCL57
|
3.5
|
32.0
|
1.0
|
CHA
|
D:BCL57
|
3.5
|
28.5
|
1.0
|
CHD
|
D:BCL57
|
3.5
|
29.9
|
1.0
|
C9
|
E:DET77
|
4.2
|
51.5
|
1.0
|
C2B
|
D:BCL57
|
4.2
|
28.5
|
1.0
|
C3D
|
D:BCL57
|
4.2
|
33.0
|
1.0
|
C3B
|
D:BCL57
|
4.3
|
36.9
|
1.0
|
C10
|
E:DET77
|
4.3
|
52.9
|
1.0
|
C2D
|
D:BCL57
|
4.3
|
31.7
|
1.0
|
ND1
|
D:HIS34
|
4.4
|
23.1
|
1.0
|
C11
|
E:DET77
|
4.4
|
60.9
|
1.0
|
C3A
|
D:BCL57
|
4.4
|
26.8
|
1.0
|
C2A
|
D:BCL57
|
4.5
|
27.4
|
1.0
|
H632
|
A:LYC97
|
4.5
|
0.0
|
1.0
|
C2C
|
D:BCL57
|
4.5
|
31.0
|
1.0
|
C3C
|
D:BCL57
|
4.5
|
32.8
|
1.0
|
CG
|
D:HIS34
|
4.5
|
27.9
|
1.0
|
CMD
|
E:BCL59
|
4.6
|
27.3
|
1.0
|
H631
|
A:LYC97
|
4.7
|
0.0
|
1.0
|
CBD
|
D:BCL57
|
5.0
|
34.7
|
1.0
|
C8
|
E:DET77
|
5.0
|
52.3
|
1.0
|
|
Magnesium binding site 5 out
of 12 in 1lgh
Go back to
Magnesium Binding Sites List in 1lgh
Magnesium binding site 5 out
of 12 in the Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg58
b:47.0
occ:1.00
|
MG
|
D:BCL58
|
0.0
|
47.0
|
1.0
|
ND
|
D:BCL58
|
2.0
|
41.9
|
1.0
|
NB
|
D:BCL58
|
2.1
|
47.7
|
1.0
|
NC
|
D:BCL58
|
2.1
|
42.9
|
1.0
|
NA
|
D:BCL58
|
2.1
|
52.4
|
1.0
|
OD2
|
D:ASP6
|
2.5
|
51.1
|
1.0
|
C4D
|
D:BCL58
|
2.9
|
47.1
|
1.0
|
C1B
|
D:BCL58
|
3.1
|
50.1
|
1.0
|
C4B
|
D:BCL58
|
3.1
|
48.6
|
1.0
|
C1C
|
D:BCL58
|
3.1
|
45.6
|
1.0
|
C1D
|
D:BCL58
|
3.1
|
45.9
|
1.0
|
C4C
|
D:BCL58
|
3.1
|
45.6
|
1.0
|
C4A
|
D:BCL58
|
3.1
|
54.7
|
1.0
|
C1A
|
D:BCL58
|
3.1
|
56.9
|
1.0
|
CG
|
D:ASP6
|
3.3
|
56.5
|
1.0
|
CHA
|
D:BCL58
|
3.4
|
50.8
|
1.0
|
CHC
|
D:BCL58
|
3.4
|
45.2
|
1.0
|
CHB
|
D:BCL58
|
3.5
|
49.6
|
1.0
|
CHD
|
D:BCL58
|
3.5
|
43.2
|
1.0
|
OD1
|
D:ASP6
|
3.8
|
48.4
|
1.0
|
C9
|
E:BCL59
|
4.0
|
57.6
|
1.0
|
C3D
|
D:BCL58
|
4.2
|
46.7
|
1.0
|
C2B
|
D:BCL58
|
4.3
|
51.7
|
1.0
|
C3B
|
D:BCL58
|
4.3
|
53.5
|
1.0
|
CB
|
D:ASP6
|
4.3
|
58.7
|
1.0
|
C2D
|
D:BCL58
|
4.3
|
45.8
|
1.0
|
O
|
D:HOH104
|
4.3
|
44.5
|
1.0
|
C2C
|
D:BCL58
|
4.4
|
51.2
|
1.0
|
C3C
|
D:BCL58
|
4.4
|
53.0
|
1.0
|
C2A
|
D:BCL58
|
4.4
|
64.4
|
1.0
|
C3A
|
D:BCL58
|
4.4
|
60.5
|
1.0
|
CBC
|
D:BCL58
|
4.8
|
53.2
|
1.0
|
HD22
|
D:ASN2
|
4.8
|
0.0
|
1.0
|
H1
|
D:HOH104
|
4.8
|
0.0
|
1.0
|
CB
|
D:PRO3
|
4.8
|
81.3
|
1.0
|
CBD
|
D:BCL58
|
4.9
|
53.3
|
1.0
|
|
Magnesium binding site 6 out
of 12 in 1lgh
Go back to
Magnesium Binding Sites List in 1lgh
Magnesium binding site 6 out
of 12 in the Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg59
b:30.1
occ:1.00
|
MG
|
E:BCL59
|
0.0
|
30.1
|
1.0
|
HE2
|
E:HIS35
|
1.5
|
0.0
|
1.0
|
ND
|
E:BCL59
|
2.0
|
31.4
|
1.0
|
NB
|
E:BCL59
|
2.1
|
30.8
|
1.0
|
NC
|
E:BCL59
|
2.1
|
29.4
|
1.0
|
NA
|
E:BCL59
|
2.2
|
30.9
|
1.0
|
NE2
|
E:HIS35
|
2.3
|
34.0
|
1.0
|
C4D
|
E:BCL59
|
3.0
|
32.2
|
1.0
|
C4B
|
E:BCL59
|
3.1
|
35.0
|
1.0
|
C1D
|
E:BCL59
|
3.1
|
33.3
|
1.0
|
C1B
|
E:BCL59
|
3.1
|
33.9
|
1.0
|
C1C
|
E:BCL59
|
3.1
|
30.9
|
1.0
|
C4C
|
E:BCL59
|
3.1
|
32.0
|
1.0
|
CE1
|
E:HIS35
|
3.2
|
41.1
|
1.0
|
C4A
|
E:BCL59
|
3.2
|
28.9
|
1.0
|
C1A
|
E:BCL59
|
3.2
|
28.0
|
1.0
|
CD2
|
E:HIS35
|
3.4
|
38.1
|
1.0
|
CHC
|
E:BCL59
|
3.4
|
33.1
|
1.0
|
CHD
|
E:BCL59
|
3.5
|
30.8
|
1.0
|
CHA
|
E:BCL59
|
3.5
|
31.3
|
1.0
|
CHB
|
E:BCL59
|
3.5
|
31.8
|
1.0
|
C3D
|
E:BCL59
|
4.2
|
33.1
|
1.0
|
C2D
|
E:BCL59
|
4.3
|
32.5
|
1.0
|
C2B
|
E:BCL59
|
4.3
|
29.4
|
1.0
|
C3B
|
E:BCL59
|
4.3
|
38.8
|
1.0
|
ND1
|
E:HIS35
|
4.3
|
38.0
|
1.0
|
C2C
|
E:BCL59
|
4.4
|
32.2
|
1.0
|
C3C
|
E:BCL59
|
4.4
|
31.9
|
1.0
|
CG
|
E:HIS35
|
4.5
|
35.4
|
1.0
|
C3A
|
E:BCL59
|
4.5
|
25.3
|
1.0
|
C2A
|
E:BCL59
|
4.5
|
27.7
|
1.0
|
CG1
|
D:VAL33
|
4.8
|
18.6
|
1.0
|
CBD
|
E:BCL59
|
5.0
|
33.9
|
1.0
|
|
Magnesium binding site 7 out
of 12 in 1lgh
Go back to
Magnesium Binding Sites List in 1lgh
Magnesium binding site 7 out
of 12 in the Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg57
b:29.4
occ:1.00
|
MG
|
G:BCL57
|
0.0
|
29.4
|
1.0
|
HE2
|
G:HIS34
|
1.4
|
0.0
|
1.0
|
NB
|
G:BCL57
|
2.0
|
27.2
|
1.0
|
ND
|
G:BCL57
|
2.0
|
31.5
|
1.0
|
NA
|
G:BCL57
|
2.1
|
28.7
|
1.0
|
NC
|
G:BCL57
|
2.2
|
33.4
|
1.0
|
NE2
|
G:HIS34
|
2.4
|
20.7
|
1.0
|
C4D
|
G:BCL57
|
3.0
|
30.8
|
1.0
|
C1B
|
G:BCL57
|
3.0
|
29.8
|
1.0
|
C4B
|
G:BCL57
|
3.0
|
31.3
|
1.0
|
C4A
|
G:BCL57
|
3.1
|
28.4
|
1.0
|
C1D
|
G:BCL57
|
3.1
|
32.3
|
1.0
|
C1A
|
G:BCL57
|
3.2
|
25.0
|
1.0
|
C1C
|
G:BCL57
|
3.2
|
30.9
|
1.0
|
C4C
|
G:BCL57
|
3.2
|
30.3
|
1.0
|
CE1
|
G:HIS34
|
3.2
|
24.6
|
1.0
|
CD2
|
G:HIS34
|
3.4
|
26.8
|
1.0
|
CHB
|
G:BCL57
|
3.4
|
29.4
|
1.0
|
CHC
|
G:BCL57
|
3.5
|
32.0
|
1.0
|
CHA
|
G:BCL57
|
3.5
|
28.5
|
1.0
|
CHD
|
G:BCL57
|
3.5
|
29.9
|
1.0
|
C9
|
H:DET77
|
4.2
|
51.5
|
1.0
|
C2B
|
G:BCL57
|
4.2
|
28.5
|
1.0
|
C3D
|
G:BCL57
|
4.2
|
33.0
|
1.0
|
C3B
|
G:BCL57
|
4.3
|
36.9
|
1.0
|
C10
|
H:DET77
|
4.3
|
52.9
|
1.0
|
C2D
|
G:BCL57
|
4.3
|
31.7
|
1.0
|
ND1
|
G:HIS34
|
4.4
|
23.1
|
1.0
|
C11
|
H:DET77
|
4.4
|
60.9
|
1.0
|
C3A
|
G:BCL57
|
4.4
|
26.8
|
1.0
|
C2A
|
G:BCL57
|
4.5
|
27.4
|
1.0
|
C2C
|
G:BCL57
|
4.5
|
31.0
|
1.0
|
C3C
|
G:BCL57
|
4.5
|
32.8
|
1.0
|
CG
|
G:HIS34
|
4.5
|
27.9
|
1.0
|
CMD
|
H:BCL59
|
4.5
|
27.3
|
1.0
|
CBD
|
G:BCL57
|
5.0
|
34.7
|
1.0
|
C8
|
H:DET77
|
5.0
|
52.3
|
1.0
|
|
Magnesium binding site 8 out
of 12 in 1lgh
Go back to
Magnesium Binding Sites List in 1lgh
Magnesium binding site 8 out
of 12 in the Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg58
b:47.0
occ:1.00
|
MG
|
G:BCL58
|
0.0
|
47.0
|
1.0
|
ND
|
G:BCL58
|
2.0
|
41.9
|
1.0
|
NB
|
G:BCL58
|
2.1
|
47.7
|
1.0
|
NC
|
G:BCL58
|
2.1
|
42.9
|
1.0
|
NA
|
G:BCL58
|
2.1
|
52.4
|
1.0
|
OD2
|
G:ASP6
|
2.5
|
51.1
|
1.0
|
C4D
|
G:BCL58
|
2.9
|
47.1
|
1.0
|
C1B
|
G:BCL58
|
3.1
|
50.1
|
1.0
|
C4B
|
G:BCL58
|
3.1
|
48.6
|
1.0
|
C1C
|
G:BCL58
|
3.1
|
45.6
|
1.0
|
C1D
|
G:BCL58
|
3.1
|
45.9
|
1.0
|
C4C
|
G:BCL58
|
3.1
|
45.6
|
1.0
|
C4A
|
G:BCL58
|
3.1
|
54.7
|
1.0
|
C1A
|
G:BCL58
|
3.1
|
56.9
|
1.0
|
CG
|
G:ASP6
|
3.3
|
56.5
|
1.0
|
CHA
|
G:BCL58
|
3.4
|
50.8
|
1.0
|
CHC
|
G:BCL58
|
3.4
|
45.2
|
1.0
|
CHB
|
G:BCL58
|
3.5
|
49.6
|
1.0
|
CHD
|
G:BCL58
|
3.5
|
43.2
|
1.0
|
OD1
|
G:ASP6
|
3.8
|
48.4
|
1.0
|
C9
|
H:BCL59
|
4.0
|
57.6
|
1.0
|
C3D
|
G:BCL58
|
4.2
|
46.7
|
1.0
|
C2B
|
G:BCL58
|
4.3
|
51.7
|
1.0
|
C3B
|
G:BCL58
|
4.3
|
53.5
|
1.0
|
CB
|
G:ASP6
|
4.3
|
58.7
|
1.0
|
C2D
|
G:BCL58
|
4.3
|
45.8
|
1.0
|
O
|
G:HOH98
|
4.3
|
44.5
|
1.0
|
C2C
|
G:BCL58
|
4.4
|
51.2
|
1.0
|
C3C
|
G:BCL58
|
4.4
|
53.0
|
1.0
|
C2A
|
G:BCL58
|
4.4
|
64.4
|
1.0
|
C3A
|
G:BCL58
|
4.4
|
60.5
|
1.0
|
CBC
|
G:BCL58
|
4.8
|
53.2
|
1.0
|
HD22
|
G:ASN2
|
4.8
|
0.0
|
1.0
|
H1
|
G:HOH98
|
4.8
|
0.0
|
1.0
|
CB
|
G:PRO3
|
4.8
|
81.3
|
1.0
|
CBD
|
G:BCL58
|
4.9
|
53.3
|
1.0
|
|
Magnesium binding site 9 out
of 12 in 1lgh
Go back to
Magnesium Binding Sites List in 1lgh
Magnesium binding site 9 out
of 12 in the Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg59
b:30.1
occ:1.00
|
MG
|
H:BCL59
|
0.0
|
30.1
|
1.0
|
HE2
|
H:HIS35
|
1.5
|
0.0
|
1.0
|
ND
|
H:BCL59
|
2.0
|
31.4
|
1.0
|
NB
|
H:BCL59
|
2.1
|
30.8
|
1.0
|
NC
|
H:BCL59
|
2.1
|
29.4
|
1.0
|
NA
|
H:BCL59
|
2.2
|
30.9
|
1.0
|
NE2
|
H:HIS35
|
2.3
|
34.0
|
1.0
|
C4D
|
H:BCL59
|
3.0
|
32.2
|
1.0
|
C4B
|
H:BCL59
|
3.1
|
35.0
|
1.0
|
C1D
|
H:BCL59
|
3.1
|
33.3
|
1.0
|
C1B
|
H:BCL59
|
3.1
|
33.9
|
1.0
|
C1C
|
H:BCL59
|
3.1
|
30.9
|
1.0
|
C4C
|
H:BCL59
|
3.1
|
32.0
|
1.0
|
CE1
|
H:HIS35
|
3.2
|
41.1
|
1.0
|
C4A
|
H:BCL59
|
3.2
|
28.9
|
1.0
|
C1A
|
H:BCL59
|
3.2
|
28.0
|
1.0
|
CD2
|
H:HIS35
|
3.4
|
38.1
|
1.0
|
CHC
|
H:BCL59
|
3.4
|
33.1
|
1.0
|
CHD
|
H:BCL59
|
3.5
|
30.8
|
1.0
|
CHA
|
H:BCL59
|
3.5
|
31.3
|
1.0
|
CHB
|
H:BCL59
|
3.5
|
31.8
|
1.0
|
CMB
|
J:BCL57
|
3.9
|
26.0
|
1.0
|
C3D
|
H:BCL59
|
4.2
|
33.1
|
1.0
|
C2D
|
H:BCL59
|
4.3
|
32.5
|
1.0
|
C2B
|
H:BCL59
|
4.3
|
29.4
|
1.0
|
C3B
|
H:BCL59
|
4.3
|
38.8
|
1.0
|
ND1
|
H:HIS35
|
4.3
|
38.0
|
1.0
|
C2C
|
H:BCL59
|
4.4
|
32.2
|
1.0
|
C3C
|
H:BCL59
|
4.4
|
31.9
|
1.0
|
CG
|
H:HIS35
|
4.5
|
35.4
|
1.0
|
C3A
|
H:BCL59
|
4.5
|
25.3
|
1.0
|
CBB
|
J:BCL57
|
4.5
|
49.8
|
1.0
|
C2A
|
H:BCL59
|
4.5
|
27.7
|
1.0
|
CG1
|
G:VAL33
|
4.8
|
18.6
|
1.0
|
CAB
|
J:BCL57
|
4.9
|
33.0
|
1.0
|
C2B
|
J:BCL57
|
4.9
|
28.5
|
1.0
|
CBD
|
H:BCL59
|
5.0
|
33.9
|
1.0
|
|
Magnesium binding site 10 out
of 12 in 1lgh
Go back to
Magnesium Binding Sites List in 1lgh
Magnesium binding site 10 out
of 12 in the Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Mg57
b:29.4
occ:1.00
|
MG
|
J:BCL57
|
0.0
|
29.4
|
1.0
|
HE2
|
J:HIS34
|
1.4
|
0.0
|
1.0
|
NB
|
J:BCL57
|
2.0
|
27.2
|
1.0
|
ND
|
J:BCL57
|
2.0
|
31.5
|
1.0
|
NA
|
J:BCL57
|
2.1
|
28.7
|
1.0
|
NC
|
J:BCL57
|
2.2
|
33.4
|
1.0
|
NE2
|
J:HIS34
|
2.4
|
20.7
|
1.0
|
C4D
|
J:BCL57
|
3.0
|
30.8
|
1.0
|
C1B
|
J:BCL57
|
3.0
|
29.8
|
1.0
|
C4B
|
J:BCL57
|
3.0
|
31.3
|
1.0
|
C4A
|
J:BCL57
|
3.1
|
28.4
|
1.0
|
C1D
|
J:BCL57
|
3.1
|
32.3
|
1.0
|
C1A
|
J:BCL57
|
3.2
|
25.0
|
1.0
|
C1C
|
J:BCL57
|
3.2
|
30.9
|
1.0
|
C4C
|
J:BCL57
|
3.2
|
30.3
|
1.0
|
CE1
|
J:HIS34
|
3.2
|
24.6
|
1.0
|
CD2
|
J:HIS34
|
3.4
|
26.8
|
1.0
|
CHB
|
J:BCL57
|
3.4
|
29.4
|
1.0
|
CHC
|
J:BCL57
|
3.5
|
32.0
|
1.0
|
CHA
|
J:BCL57
|
3.5
|
28.5
|
1.0
|
CHD
|
J:BCL57
|
3.5
|
29.9
|
1.0
|
C9
|
K:DET77
|
4.2
|
51.5
|
1.0
|
C2B
|
J:BCL57
|
4.2
|
28.5
|
1.0
|
C3D
|
J:BCL57
|
4.2
|
33.0
|
1.0
|
C3B
|
J:BCL57
|
4.3
|
36.9
|
1.0
|
C10
|
K:DET77
|
4.3
|
52.9
|
1.0
|
C2D
|
J:BCL57
|
4.3
|
31.7
|
1.0
|
ND1
|
J:HIS34
|
4.4
|
23.1
|
1.0
|
H632
|
G:LYC97
|
4.4
|
0.0
|
1.0
|
C11
|
K:DET77
|
4.4
|
60.9
|
1.0
|
C3A
|
J:BCL57
|
4.4
|
26.8
|
1.0
|
C2A
|
J:BCL57
|
4.5
|
27.4
|
1.0
|
C2C
|
J:BCL57
|
4.5
|
31.0
|
1.0
|
C3C
|
J:BCL57
|
4.5
|
32.8
|
1.0
|
CG
|
J:HIS34
|
4.5
|
27.9
|
1.0
|
CMD
|
K:BCL59
|
4.5
|
27.3
|
1.0
|
H631
|
G:LYC97
|
4.7
|
0.0
|
1.0
|
CBD
|
J:BCL57
|
5.0
|
34.7
|
1.0
|
C8
|
K:DET77
|
5.0
|
52.3
|
1.0
|
|
Reference:
J.Koepke,
X.Hu,
C.Muenke,
K.Schulten,
H.Michel.
The Crystal Structure of the Light-Harvesting Complex II (B800-850) From Rhodospirillum Molischianum. Structure V. 4 581 1996.
ISSN: ISSN 0969-2126
PubMed: 8736556
DOI: 10.1016/S0969-2126(96)00063-9
Page generated: Tue Aug 13 08:30:27 2024
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